Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1245 ATGGCGAGACGAAACGGCTCAGATTCCGAAGAGGAAGAGGAGGAGCAGCAAGAAGAGGAGGTTCACGACCAGATCGAAGAGGACGACGAGGAACTCGAAGCCGTGGCTCGCTCCGCTAGCTCCGACGACGAGCCGGATGAATCCGGCGGCGAAGATGCTGTTGCTGCTGATGACGATAATCAGGATGATGAAGGTAATGCGGCTGATCCTGAAATTAGCAAACGCGAGAAGGCTAGGCTAAAGGAATTGCAGCAATTGAAGAAGCAGAAGATTCAGGAGATACTGGATGCACAAAATGCAGCCATTGATGCTGATATGAACAATAGAGGAAAGGGTAGGTTGAACTATCTCTTGCAGCAGACTGAGTTGTTTGCTCATTTTGCCAAAGCTGATCAATCTTCATCTCAAAAGAAGGGAAAGGGAAGGGGACGCCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAGTACCTGAAGGAAGAAGAAGGTGGTTCAGCAAACACACGGCTGATGACTCAACCTTCATGTATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTCATCAGATTGTATGAGAATGGAATAAATGGGATTCTGGCAGATGAAATGGGGCTTGGTAAAACTTTGCAAACTATATCTTTGCTGGCCTATTTACATGAGTTCAAAGGAATAACAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTCTGTCCTGTTATACGTGCAATAAAGTTCCTTGGTAACCCTGATGAGAGGAGGCATATAAGGGAGGAGCTATTGGTTGCTGGAAAGTTTGATGTGTGCGTGACAAGCTTTGAAATGGTAATCAAGGAGAAGTCTGCGTTTCGTCGATTTAACTGGCGTTACATAATTATTGATGAAGCTCACAGAATCAAGAATGAGAATTCCCTCCTGTCCAAAACAATGAGGCTATACAATACAAACTATCGGCTCCTTATAACAGGCACACCACTACAGAACAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAAGTTGTCCAACAACTACACAAAGTCCTCCGTCCATTTCTCCTTCGAAGATTGAAATCTGATGTCGAGAAAGGGTTGCCACCGAAAAAGGAAACCATTCTTAAAGTAGGTATGTCACAAATGCAGAAACAGTATTATAGGGCCTTGCTGCAGAAGGATCTTGAGGTTGTAAATGCCGGTGGAGAACGGAAGCGTCTCTTAAATATAGCGATGCAACTACGTAAATGTTGTAATCACCCATATCTCTTCCAAGGTGCTGAACCTGGTCCTCCCTACACAACAGGAGACCATCTGGTTACAAATGCTGGTAAAATGGTTCTACTGGATAAATTACTTCCTAAACTAAAAGAACGGGATTCTAGGGTACTTATATTTTCACAGATGACTAGGCTGTTGGACATACTTGAAGATTATTTAATGTTTCGAGGATACAAATATTGCCGCATAGATGGCAATACTGGTGGAGAAGATCGTGATGCTTCCATTGAGGCTTTCAACAAACCAGGAAGCGAGAAATTTGTCTTCTTGCTATCTACTCGGGCTGGTGGTCTTGGCATAAATCTTGCTACTGCTGATATTGTCATTCTTTATGATAGTGACTGGAACCCACAGGTTGACCTGCAAGCTCAGGATCGGGCTCATAGGATTGGTCAGAAGAAAGAAGTTCAAGTTTTCAGATTCTGCTCAGAGTTTACTATTGAGGAAAAAGTCATTGAAAGGGCTTACAAAAAGCTCGCACTTGATGCTCTGGTGATTCAGCAAGGGCGTTTAGCTGAGCAGAAGACTGTAAATAAGGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATCACTGATGAGGACATTGACAGAATTATTGCTAAAGGAGAGGAAGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCTATCAAATTCAAGATGGATGACCCTGCTGAATTGTATAATTTTGATGATGAGGAGGATGAGAACAAATTTGATATAAAAAAGATTGTGACTGAAAACTGGGTCGAACCATCAAGAAGAGAACGGAAGCGCAATTACTCAGAATCTGAATACTTCAAGCAAACTATGCGTCAAGGTGGTCCTACTAAACCAAAAGAGCCTCGTATTCCAAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACACAGGCTGAATGAGCTGTATGAAAAGGAAGTTCGCCGTCTAATGCAAGCACATCAGAAGAGTCAGGTGAAGGACTCCATAGATGTTGATGAACCAGAAGAAATTGGAGATTCACTGACTGTTGAAGAGGTGGAAGAAAAGGAGCGCCTGCTAGAGGAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCATGTGAAAAGTATGGCCGAAATGACATACAAAGTATTGCTTCTGAGATTGAAGGAAAAACAGAAGAGGAAGTTGAAAGATATGCGAAAGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGGGAGACAAGAATATCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAAAAGTTGGACCGCTACAAGAATCCATGGCTAGAGTTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGACCGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAATTGGGATGAATTGAAATCGGCGTTTCGAATGTCGCCCTTGTTTAAGTTTGATTGGTTTGTGAAGTCTCGCACGACGCAGGAACTGACAAGGAGGTGCGACACCCTCATTCGGCTGATAGAGAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGCAAAGAAAAGAAACTCGCCGCGAAGAATTCAACCCCATCAAAGCGTGCAGTGCCAAGACAGGCGGAGAGTCCATCTCTGAAGAAACGGAAGCAGTTAACTATGGATGACTATTTAAGCTCGGGAAAGAAGAAAAAATAG 3174 0.4241 MARRNGSDSEEEEEEQQEEEVHDQIEEDDEELEAVARSASSDDEPDESGGEDAVAADDDNQDDEGNAADPEISKREKARLKELQQLKKQKIQEILDAQNAAIDADMNNRGKGRLNYLLQQTELFAHFAKADQSSSQKKGKGRGRHASKVTEEEEDEEYLKEEEGGSANTRLMTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEFKGITGPHMVVAPKSTLGNWMNEIRRFCPVIRAIKFLGNPDERRHIREELLVAGKFDVCVTSFEMVIKEKSAFRRFNWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYKYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCSEFTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDPAELYNFDDEEDENKFDIKKIVTENWVEPSRRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTHRLNELYEKEVRRLMQAHQKSQVKDSIDVDEPEEIGDSLTVEEVEEKERLLEEGFSSWSRKDFNAFIRACEKYGRNDIQSIASEIEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGETRISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKSAFRMSPLFKFDWFVKSRTTQELTRRCDTLIRLIEKENQEYDERERQARKEKKLAAKNSTPSKRAVPRQAESPSLKKRKQLTMDDYLSSGKKKK* 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1245 1057 SMART helicmild6 513 597 IPR001650 -
Lja4g1245 1057 Coils Coil 983 1021 - -
Lja4g1245 1057 SUPERFAMILY Homeodomain-like 888 1010 IPR009057 -
Lja4g1245 1057 MobiDBLite consensus disorder prediction 1004 1021 - -
Lja4g1245 1057 Pfam Helicase conserved C-terminal domain 485 597 IPR001650 -
Lja4g1245 1057 MobiDBLite consensus disorder prediction 129 166 - -
Lja4g1245 1057 SMART ultradead3 178 370 IPR014001 -
Lja4g1245 1057 Gene3D - 921 1025 - -
Lja4g1245 1057 Pfam HAND 746 805 IPR015194 GO:0003677|GO:0006338|GO:0031491
Lja4g1245 1057 MobiDBLite consensus disorder prediction 741 766 - -
Lja4g1245 1057 Gene3D - 403 695 IPR027417 -
Lja4g1245 1057 MobiDBLite consensus disorder prediction 1004 1057 - -
Lja4g1245 1057 MobiDBLite consensus disorder prediction 1 76 - -
Lja4g1245 1057 MobiDBLite consensus disorder prediction 11 33 - -
Lja4g1245 1057 MobiDBLite consensus disorder prediction 1033 1057 - -
Lja4g1245 1057 Gene3D - 183 398 IPR038718 -
Lja4g1245 1057 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 8 1057 - -
Lja4g1245 1057 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 745 835 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lja4g1245 1057 CDD DEXHc_SMARCA1_SMARCA5 179 399 IPR044754 GO:0005524
Lja4g1245 1057 Gene3D - 834 887 - -
Lja4g1245 1057 Gene3D iswi atpase 888 920 - -
Lja4g1245 1057 Gene3D ISWI, HAND domain 734 833 IPR036306 GO:0003677|GO:0006338|GO:0031491
Lja4g1245 1057 Coils Coil 7 31 - -
Lja4g1245 1057 PANTHER SNF2/RAD54 HELICASE FAMILY 8 1057 - -
Lja4g1245 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 397 IPR027417 -
Lja4g1245 1057 ProSiteProfiles SANT domain profile. 832 884 IPR017884 -
Lja4g1245 1057 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 399 680 IPR027417 -
Lja4g1245 1057 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 194 359 IPR014001 -
Lja4g1245 1057 Pfam SNF2-related domain 195 462 IPR000330 GO:0005524|GO:0140658
Lja4g1245 1057 Pfam SLIDE 890 1000 IPR015195 GO:0003677|GO:0005634|GO:0006338
Lja4g1245 1057 CDD SANT 836 880 IPR001005 -
Lja4g1245 1057 CDD SF2_C_SNF 483 608 - -
Lja4g1245 1057 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 487 638 IPR001650 -
Lja4g1245 1057 MobiDBLite consensus disorder prediction 45 66 - -
Lja4g1245 1057 SMART sant 935 996 IPR001005 -
Lja4g1245 1057 SMART sant 833 882 IPR001005 -
Lja4g1245 1057 Coils Coil 73 100 - -
Lja4g1245 1057 SUPERFAMILY Homeodomain-like 836 886 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1245 Lja-Chr4 11011934 11019619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1245 203 624 RAD5 or RAD16-like Gene Family AT1G02670 26.733 1.69e-41 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja4g1245 SNF2_N 1.9e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1245 K11654 - gmx:100791510 1867.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1245 4 11011934 11019619 Lja4g1245 4 11011934 11019619 ECH
Lja4g1245 4 11011934 11019619 Lja6g2805 6 57108862 57131016 PCT