Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1243 ATGAAAGGAGGTTACAGTGACTCTGCAATGGTGGTGCCACCTTCTTCTTCTGCTGAACCCATCTCAAGAAAGCGTGGTCTACAATCTGATGCATCAATTGCTGAGAGTCTTCACCTGGAACGTCACCGGAGGTTGAAGATGACTCAGATGTTCACTCACCTCCAAACCACTGTCCCTGGCCTCAAACCTAAGGCTTCAAGGGAAGTGATTGTAACCAAAACCATTAGCTACATTCAGGAGCTTGAGAAGAAGAAGCAGAGGTTGGAGGAGCTGAAGGAGATGAAGAAAACAGGGGGGTTCATGCTTCCGTGCGGTGGTGGTTCCACCAGGAATTGCTCCGTCGCGGTTACTGTTTCAAGCAATGTTGCCTTCTTTGGAATTCAATCGGTGGCTCAGCCTGGTTTGGTCACCGTGATTCTGAAGGTGTTTTGCAAGCACCGAGCTGAGGTTTTGGCTGCTAATGTGTCAGTGAATAATGGGAAGTTGATGTTGGCAATCACAGCTTTGGTTCAAATTGGTGATGGAAATAGTACTGTTGAGAAGATCAAGAGAGAAATTGCTGAGTTTATAGGTTGA 576 0.4688 MKGGYSDSAMVVPPSSSAEPISRKRGLQSDASIAESLHLERHRRLKMTQMFTHLQTTVPGLKPKASREVIVTKTISYIQELEKKKQRLEELKEMKKTGGFMLPCGGGSTRNCSVAVTVSSNVAFFGIQSVAQPGLVTVILKVFCKHRAEVLAANVSVNNGKLMLAITALVQIGDGNSTVEKIKREIAEFIG* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1243 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 81 IPR011598 GO:0046983
Lja4g1243 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 104 IPR036638 GO:0046983
Lja4g1243 191 MobiDBLite consensus disorder prediction 1 27 - -
Lja4g1243 191 Pfam Helix-loop-helix DNA-binding domain 39 82 IPR011598 GO:0046983
Lja4g1243 191 Gene3D - 36 98 IPR036638 GO:0046983
Lja4g1243 191 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 22 186 - -
Lja4g1243 191 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 22 186 - -
Lja4g1243 191 Coils Coil 71 98 - -
Lja4g1243 191 SMART finulus 37 87 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1243 23 89 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 37.838 1.41e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g1243 HLH 2.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1243 - - aprc:113874666 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1243 4 11002599 11003249 Lja4g1243 4 11002599 11003249 ECH