Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1227 ATGGGGAGGTACCGTAGCCGGAGCAGAAGCTACAGCCCTCGCCGACGCAGCAGAACCCCTCCACCGCGCGGACGCAAGCGCTACGACGATGATCGCACCCGCTCATACAGAGACCGCCGTTCACCTCTTCCTTCTGGACTCCTTGTTCGCAATCTCCCCCTCGATGCTAGGCCTGAAGATCTCAGGGGGCCATTTGAGCGATACGGTCCTGTGAAGGATGTTTATCTTCCTAAAAATTACTACACTGGTGAGCCAAGGGGCTTTGGATTTGTGAAGTATCGTTTTGGCGAAGATGCAGCAGAGGCTAAGCATCATCTTAATCACACTATCATTGGTGGGCGTGAAATAAGAATTGTGTTTGCTGAGGAAAATAGGAAAACACCTCAAGAGATGCGTGTTACTTCTCGTCCAAGCAGTCGACATGGAGGTGGTAGAAGGAGGACTGGAACAAGATCACCCCCAAGACGCCGATATCATTCCTACTCTAGGTCTCCATCACCAGCCAGGGATGATTCAAGGGGTAGGGATGATTATTATTCTCCTGAGCGATCAAGATCTTATTCTAGGTCTCGCTCTCCTAGTGGCGGAAAGGACTACAGAAGGTCCCCTCATCCCAGGGAGAATGGTCGGAGTCCTAATGACAAGAGGGATCAGTCACCTAGCAGATCTCTGAGTCCCAGACGTGATGATCCTTCTAATGAAAAGAGGGATCGGGCACCTAACAGATCTGTGAGTCCTAGACGCGATGATCGCAGTCCTTCAAGGTCCCGTTCGCGGTCATACAGTCCACGCTGA 795 0.517 MGRYRSRSRSYSPRRRSRTPPPRGRKRYDDDRTRSYRDRRSPLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHLNHTIIGGREIRIVFAEENRKTPQEMRVTSRPSSRHGGGRRRTGTRSPPRRRYHSYSRSPSPARDDSRGRDDYYSPERSRSYSRSRSPSGGKDYRRSPHPRENGRSPNDKRDQSPSRSLSPRRDDPSNEKRDRAPNRSVSPRRDDRSPSRSRSRSYSPR* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1227 264 MobiDBLite consensus disorder prediction 194 257 - -
Lja4g1227 264 MobiDBLite consensus disorder prediction 23 39 - -
Lja4g1227 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 117 IPR000504 GO:0003723
Lja4g1227 264 Gene3D - 2 136 IPR012677 -
Lja4g1227 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 123 IPR000504 GO:0003723
Lja4g1227 264 MobiDBLite consensus disorder prediction 163 184 - -
Lja4g1227 264 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 227 - -
Lja4g1227 264 MobiDBLite consensus disorder prediction 139 158 - -
Lja4g1227 264 MobiDBLite consensus disorder prediction 122 264 - -
Lja4g1227 264 MobiDBLite consensus disorder prediction 1 22 - -
Lja4g1227 264 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 227 - -
Lja4g1227 264 SUPERFAMILY RNA-binding domain, RBD 47 151 IPR035979 GO:0003676
Lja4g1227 264 MobiDBLite consensus disorder prediction 1 44 - -
Lja4g1227 264 SMART rrm1_1 46 119 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1227 Lja-Chr4 10875765 10880242 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1227 49 107 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 1.46e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1227 K12900 - gmx:100788749 265.003