Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1215 ATGGGTTGTGTCAATTGCAAGTTTTGCTGTGCCAACCCTTCTTCATTAGATGGTGATTCTGGGAACTACAGAGAACATGGCTTCCCACGTGGCCATAAGAAGAACATAATCTCTCAGAGATCAGTGAAGTCTGTTCCTGTTCCTTCCCACAACTTCAAGTTGGAGTATACTTTTCTCACGCTGAGAGGATACTACCCTGACTCTCCGGATAAAGAAAACCAAGACAGTTTTTGCATTAGGACACAAATTCAAGGTAACCCCAGTGTCCATTTCTTTGGTGTTTATGATGGACATGGTCAATTAGGCAGCCGGTGTTCGAACTTTGTTAAGGATAGACTGGTAGAAAATTTATCAAATGATCCTGCATTGTTGGAGGACCCTGTTCAAGCATACACTTCTGCGTTCTCGACGACGAATCACGAGTTGCGTATTAGTGAGATCGATGATTCAATGAGTGGCACTACTGCAATTACGGTGCTTGTTATTGGAGATACCCTCTATGTGGCTAATGTTGGTGATTCTAGAGCTGTCATAGCTGTTAAGGATGGGAATCGCGTTATTGCTCAGGACTTGTCCTCTGATCAGACACCGTTTCGGAGAGATGAATATGAGAGGGTGAAACTTTGCGGGGCAAGGGTGTTGAGTGTTGATCAAGTGGAAGGGCTCAAGGATCCGGATATCCAGCATTGGGGTGATGAAGAGAGTCGGGGTAATGATCCTCCAAGACTGTGGGTTCCAAATGGGATGTATCCTGGAACTGCGTTTACAAGGAGTTTAGGGGATAGTTTGGCCGAGACTATTGGTGTTGTTGCAATTCCAGAAGTTTTACAACTCCAGCTGACACCTAATCATCTTTTCTTTATAGTTGCAAGTGATGGAGTATTTGAATTCCTGTCAAGCCAAACTGTTGTTGATATGGCAGCACGCTATACAAATCCTCATGATGCGTGTGTGGCTATTGCTGAAGAGTCATATAAACGCTGGTTGGAACTTGAGAACCGAACAGATGATATAACAATTATCATTGTTCAGATCAAAGGCCTCAATAATTCAAGTGCATCTGGAGTAGAATCCGGTGAGGTCAATGTTGCTACTGCAACAAGGTCCAGGAGAGGAACTTCTGAGATATCTGCTACCACTGGATCTGATGTTTATCGTTCTGTGAGGAACAGTCTCTCTGACTTAGAATCCTGTCAGCATGTGGCTTCAATAAGAAGCCCTGCCACACCGGTTCACTCTTCAGCACATCCAGGATCAATTGAGTCGGTATGA 1272 0.4426 MGCVNCKFCCANPSSLDGDSGNYREHGFPRGHKKNIISQRSVKSVPVPSHNFKLEYTFLTLRGYYPDSPDKENQDSFCIRTQIQGNPSVHFFGVYDGHGQLGSRCSNFVKDRLVENLSNDPALLEDPVQAYTSAFSTTNHELRISEIDDSMSGTTAITVLVIGDTLYVANVGDSRAVIAVKDGNRVIAQDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGLKDPDIQHWGDEESRGNDPPRLWVPNGMYPGTAFTRSLGDSLAETIGVVAIPEVLQLQLTPNHLFFIVASDGVFEFLSSQTVVDMAARYTNPHDACVAIAEESYKRWLELENRTDDITIIIVQIKGLNNSSASGVESGEVNVATATRSRRGTSEISATTGSDVYRSVRNSLSDLESCQHVASIRSPATPVHSSAHPGSIESV* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1215 423 Gene3D - 49 347 IPR036457 -
Lja4g1215 423 Pfam Protein phosphatase 2C 77 325 IPR001932 -
Lja4g1215 423 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Lja4g1215 423 SUPERFAMILY PP2C-like 45 348 IPR036457 -
Lja4g1215 423 SMART PP2C_4 51 343 IPR001932 -
Lja4g1215 423 CDD PP2Cc 71 345 IPR001932 -
Lja4g1215 423 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Lja4g1215 423 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 33 413 - -
Lja4g1215 423 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 33 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1215 Lja-Chr4 10775952 10779638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1215 1 350 PP2C-type Phosphatase Gene Family AT3G06270 67.898 4.56e-175 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1215 - - gmx:100797866 679.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1215 4 10775952 10779638 Lja4g1215 4 10775952 10779638 ECH
Lja4g1215 4 10775952 10779638 Lja6g2337 6 52249419 52253392 PCT