Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1211 ATGGCTTCTCCTCCTCACTCCTCCCCTCCTCCAGATCCACCCTCCGCCCTCCCCCTCGCCCTCATCCCAATCCCTCCTCCCCCCACCGCCACCCCCACCTCCTCCCGCCGCCTCCCTCCCCCCTGCTGGTCCCCGGACGAAACCTTCGCCCTCATCGACGCCTACCGTGACAAATGGTACTCCCTCGGCCGCGGAAACCTCAAAGCCTCCCACTGGCAAGACGTCGCCGACGCCGTCTCCCACCGCTGCCCTGAAAAAACCCCGGCCAAGACCCCCATCCAGTGCCGCCACAAGATGGAGAAGCTTCGCAAACGCTACCGCACCGAGATCCAACGCGCTCGCTCCCTCCCCATCTCCCGCTTCACCTCCTCCTGGGCCCACTTCTCCCTCATGGATTCCATGGAGAAAGGCCCCTCCCCTGTCAAACCCGAAATCGACTCCGACCACAGCCCCCACCACGACGACAACAACAACGACGATCACGATCAGGATTTCTACGGCGGCAACGACGGCCACGGATCTAGCACCAGGAGCCTGAACAAGCTCTACAAGAACGGATTCTCCAGCGGCGGGTTCAGGATCCGGATTCCAACCGGGTCGGGCGCGGCGCAACCCGGACCCAAACTCTTCGGGTTCGGGAAGGTTGCGAATCAGAAATTCAATGCTAATCTGAATCACAACGCTAGCAATGACCACGAGGCGAGGGATTCGGGGAAGAAGAGGGAGAGAGATCCGGTGGGGGAAGTGGTGTCTGCGATTAAGGTTTTGGGTGATGGGTTTGTGCGGATGGAGCAGATGAAGATGGAGATGGCGAAGGAGATTGAAATGATGCGGATTGAGACAGAGATGAAGCGCACTGAGATGATTCTGGAGTCTCAACAGCGAATTGTGGAGTCGTTTGCGAGGGCGATTTCGGAGAACAACAAGAAGAAGAACATGAGAGTTTCCTCACCTCAAGAACCCTAG 966 0.5901 MASPPHSSPPPDPPSALPLALIPIPPPPTATPTSSRRLPPPCWSPDETFALIDAYRDKWYSLGRGNLKASHWQDVADAVSHRCPEKTPAKTPIQCRHKMEKLRKRYRTEIQRARSLPISRFTSSWAHFSLMDSMEKGPSPVKPEIDSDHSPHHDDNNNDDHDQDFYGGNDGHGSSTRSLNKLYKNGFSSGGFRIRIPTGSGAAQPGPKLFGFGKVANQKFNANLNHNASNDHEARDSGKKRERDPVGEVVSAIKVLGDGFVRMEQMKMEMAKEIEMMRIETEMKRTEMILESQQRIVESFARAISENNKKKNMRVSSPQEP* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1211 321 Gene3D - 43 108 - -
Lja4g1211 321 MobiDBLite consensus disorder prediction 222 246 - -
Lja4g1211 321 Coils Coil 96 116 - -
Lja4g1211 321 MobiDBLite consensus disorder prediction 139 167 - -
Lja4g1211 321 Pfam Myb/SANT-like DNA-binding domain 41 134 IPR044822 -
Lja4g1211 321 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 7 318 IPR044823 -
Lja4g1211 321 MobiDBLite consensus disorder prediction 134 177 - -
Lja4g1211 321 MobiDBLite consensus disorder prediction 1 41 - -
Lja4g1211 321 MobiDBLite consensus disorder prediction 229 246 - -
Lja4g1211 321 PANTHER TRANSCRIPTION FACTOR 7 318 - -
Lja4g1211 321 SMART 118neu2 50 139 IPR006578 -
Lja4g1211 321 ProSiteProfiles Myb-like domain profile. 43 103 IPR001005 -
Lja4g1211 321 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1211 Lja-Chr4 10730684 10732311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1211 3 134 Trihelix Transcription Factor Family AT3G14180 35.294 4.27e-18 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja4g1211 Myb_DNA-bind_4 5.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1211 - - vun:114179736 392.889