Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1204 ATGATGATTGCAATGGAAAACCCAGTGGGTACTGAACTAGCAATGAACAATGCTAGTGTTGTTGTTGAAGTAATTGAATTTTCCTGTGAACCATACATAGGGTTAGAATTTGATACATCAGATGAGGCGCTTAAGTTTTATGAATCATATGCAAAGCGAACAGGATTTAAGGTTCGGATTGGTCAGCTGTACCGGTCGAGGACTGATGGGTCTGTTTCTTCTCGAAGATTTGTCTGCTCAAAGGAGGGTTATCAGCTCAGTTCAAGAACAGGTTGTCCAGCATTCATAAGGGTGCAAAGACAAGATTCTGGGAAGTGGGTTGTTGATCATTGCTTCAAGAGCCACAATCATGATCTTGAAACTGAAAGTGCATATTGCAATCCAGATTTGAAGCAGAAGGGTGCTGCAACTATCAATTCTTTTGTTAATGTGCCCCACAGGCGAAGGAAGAAGAAATTGTTGCTTGGAGAAGCCAAGGTTATTGATTTCAAACGCCTGAGAAAAGAAGGGGGTGATGGACAGTCTAAGTTTGAACCATTTGTAGGTCAAGTGTTCAATTCAGCTAATGAAGCCTACCAATTTTATCATGCATATGCAGCATCCGTTGGTTTTGGAGTCCGAATTGGTCAGCTGTTTCGTTCGAAGAATGATGGCTCGATCACATCCCGTCGATTTGTGTGCTCGAAGGAAGGGTTTCAGCACCCTTCGAGAGTTGGTTGTGGGGTTTATTTGAGGATTAAGAGTCAGTCATCTGGCAAGTGGGTAGTGGACCGTCTCGAAAAAGACCACAATCATAATCTGGATATGGAAAAAGAGTGTAGACAAAATCACATTAAAGATGACTGGTATACTGTGCTTTTACAGTATTTCCAATCAAGACAAGCCGAAGATACAGGATTCTTTTATGCTGTGGAAGTTGAAAACGGTAAATGCATGAGCATATTTTGGGCTGATGGAAGATCTAGATATTCATGTAGTCAGTTTGGCGATGTCCTTGTTTTAGACACGTCTTATCGAAAAACTGACTATTTGGTACCCTTCGCTACTTTTGTTGGCGTTAACCATCACAAGCAACCTGTGCTTCTTGGATGTGCTCTAATTGCTGATGAATCTGAGGAGTCTTTCACCTGGTTGTTTCAGACTTGGCTGAAGGCAATGTCTGGTCGGCAACCCCTCTCAATAATAGCTGATCAAGACATTGCAATCCAGACGGCAATAGCTAAAGTCTTTTCGGAAACCCATCATCGCTTTTCATCATGGCAAATTAAGGAAAAGGTACAAGATAATCTGGGTCTGATGGGCAATGAATTTTTAAATGATTATGAAAAGTGTGTTTACCAGAGTCAAGCAGTTGACGAATTTGACACTGCATGGAATGCCTTGCTCAACAAATACGGATTGAAGGATAATGCTTGGTTAAAAGAGATGTATGAGAAGCGTGCATCGTGGGTTCCAATATATTTGAGGGGATTTTTTTTCGCTGGCATTCCCATTAATGATAGTGTTGATTCATTCTTTGGTGCACTTTTAAATGCCCAAACACCTGTCATGGAGTTCATTTCACGGTATGAGAGAGGCCTTGAGCGACGTCGGGAAGAAGAAAGAAAAGAGGATTTAAATGCTTCCAATTTTCAAACATCTTTGCAAACAAAAGAACCGGTTGAAGAACAATTTAGAAGGCTTTACACTCCTACCATATTCAAAGTATTTCAAAAAGAGCTTTTGCAATGCTATAGTTATCTCGGATATAAAAGCTATGAAGAAGGGGGGCTTAGCAGATATTTGGTGCGGAGGTGCGGGAATGATCTGGAGAAGCATTTTGTTACATGTATTGCGTCCAATCTAGGCATTAGTTGCAGCTGTCAGATGTTTGAGCATGAAGGTGTCCTTTGTAGACATGTTTTAAGGGTTTTCCAAATATTGGAATTGAGAGAAGTTCCGTCTCGCTACATCTTACACCGATGGACAAGAAATGCGGATGATGGTGAATTTGATGTTATGGAGTTTAAGAGAAACTGCATCTCAATTGAAACGTATAAACTTGCTTCTGAGATTTTGCGAGAGGGTGGAAGGAAGCTCTGTTGGTATAGGTGA 2094 0.4102 MMIAMENPVGTELAMNNASVVVEVIEFSCEPYIGLEFDTSDEALKFYESYAKRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGYQLSSRTGCPAFIRVQRQDSGKWVVDHCFKSHNHDLETESAYCNPDLKQKGAATINSFVNVPHRRRKKKLLLGEAKVIDFKRLRKEGGDGQSKFEPFVGQVFNSANEAYQFYHAYAASVGFGVRIGQLFRSKNDGSITSRRFVCSKEGFQHPSRVGCGVYLRIKSQSSGKWVVDRLEKDHNHNLDMEKECRQNHIKDDWYTVLLQYFQSRQAEDTGFFYAVEVENGKCMSIFWADGRSRYSCSQFGDVLVLDTSYRKTDYLVPFATFVGVNHHKQPVLLGCALIADESEESFTWLFQTWLKAMSGRQPLSIIADQDIAIQTAIAKVFSETHHRFSSWQIKEKVQDNLGLMGNEFLNDYEKCVYQSQAVDEFDTAWNALLNKYGLKDNAWLKEMYEKRASWVPIYLRGFFFAGIPINDSVDSFFGALLNAQTPVMEFISRYERGLERRREEERKEDLNASNFQTSLQTKEPVEEQFRRLYTPTIFKVFQKELLQCYSYLGYKSYEEGGLSRYLVRRCGNDLEKHFVTCIASNLGISCSCQMFEHEGVLCRHVLRVFQILELREVPSRYILHRWTRNADDGEFDVMEFKRNCISIETYKLASEILREGGRKLCWYR* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1204 697 Pfam MULE transposase domain 331 424 IPR018289 -
Lja4g1204 697 SMART 26again6 617 644 IPR006564 GO:0008270
Lja4g1204 697 Pfam SWIM zinc finger 608 639 IPR007527 GO:0008270
Lja4g1204 697 Pfam FAR1 DNA-binding domain 45 120 IPR004330 -
Lja4g1204 697 Pfam FAR1 DNA-binding domain 193 267 IPR004330 -
Lja4g1204 697 ProSiteProfiles Zinc finger SWIM-type profile. 607 642 IPR007527 GO:0008270
Lja4g1204 697 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 155 667 IPR031052 GO:0006355
Lja4g1204 697 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 27 123 IPR031052 GO:0006355
Lja4g1204 697 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 155 667 - -
Lja4g1204 697 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 27 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1204 Lja-Chr4 10675505 10677772 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lja4g1204 MULE 3.6e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1204 - - gmx:100780519 1068.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1204 4 10675505 10677772 Lja4g1204 4 10675505 10677772 ECH