Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1199 ATGCATCCTGATCAGAGAAAAAAGTCGTCTGTAGATGTAGACTTCTTTACAGAATATGGTGAAGGGAGTAGATACAGAATAGAGGAAGTAATTGGTAAAGGAAGCTATGGCGTTGTTTGCTCTGCATATGATACGCACACTGGGGAAAAGGTCGCAATAAAGAAAATAAATGACATATTTGAACATGTTTCTGATGCCACCCGCATTCTTCGCGAGATCAAGCTTCTTAGACTCTTACGTCATCCTGATATTGTGGAGATCAAGCATGTTCTGTTACCTCCTTCGAGAAGGGAATTCAAAGATATATATGTTGTTTTTGAACTTATGGAATCTGATTTACATCAGGTTATTAAAGCAAATGATGATTTGACTCCAGAGCATTACCAGTTTTTTCTTTATCAGCTTCTTCGAAGTTTGAAGTATATACACACAGCAAATGTTTTTCACCGAGATCTAAAGCCAAAAAACATTTTAGCGAATGCTGACTGCAAACTGAAGATTTGTGACTTTGGTCTTGCAAGAGTAGCTTTCAACGATACACCCACTGCTATATTCTGGACAGATTATGTTGCAACAAGGTGGTACAGGGCTCCTGAGTTGTGTGGATCCTTTTTCTCCAAGTATACACCGGCTATAGACATATGGGGCATTGGATGCATTTTCGCTGAACTTTTAACTGGAAAACCTCTTTTCCCGGGGAAGAATGTTGTCCATCAATTGGATCTCATGACTGATTTTCTTGGAACCCCATCTCCTGAAGCCATTGCCAGGATACGAAATGAGAAAGCTCGGAGATACTTGAGCAGCATGCGTAAGAAGAAACCAGTTCCTTTCTCCCAAAAATTTCCTAATGCAGATCCCCTTGCTCTTCGTGTGTTAGAAAAAATGCTGGCCTTTGAACCTAAGGATCGACCTACTGCTGAAGAGGCTCTAGCAGATCCATATTTTAAAGGCTTGGCCAGGGTTGAGAGAGAGCCTTCTTCTCAGCCAGTTACCAAGATGGAATTTGAATTTGAGAGACGCAGGATAACAAAGGATGATGTGCGAGAGCTTATTTATAGAGAGATTCTGGAGTACCATCCGAATATGTTAAAGGAACATCTAGAGGGTGCAGAGACACTGGGATTCATGTATCCAAGTGCTGTGGACCATTTCAAGAAGCAATTTGCATATCTTGAAGAGCATTATGGAAAAGGTGGAACTGTTACTCCACCTGAGAGGCAACATGCATCATTACCCAGGCCTTGTGTGTTGTATTCAGATAACTCAAGACAGAATACGGCCGAGGTTGTAGATGATCTCTCCAAGTGTGTCATCAAGGAAGTTGAGAAGCCAGCCGTAGATAGGACCGGCGGTGTCCCTATGAACAAGATTCCTTTTCATGCTCCTCAAAATATGCAAGGTGTAATGACTGATCGGAATATTGCTGCACGGCCCAGAAGAGCTGTGGGTTCAGCATTGCATCACAACAAACGTGGAGTGACATTGACAGCAGCAGAGGCCGAGCAGCGGAGGATGATTAGAAATCCATCAGTTTCAGCCGCCCAGTATGCTGCTTCAAGCTGTTCATATCCTAAAAGAAACCCAAGCTGTAAAAATGAGAGAGCAGAAGATGGGATTGAAGGCTCTAATGGACTTCAGCCGAAGCCTCAGTACATAGCACAAAAAGTTGTTGCTGCTGCTCAAGGCGGAGCTGGTGGTAATTGGCATTAA 1713 0.4285 MHPDQRKKSSVDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHVLLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRSLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWGIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPSPEAIARIRNEKARRYLSSMRKKKPVPFSQKFPNADPLALRVLEKMLAFEPKDRPTAEEALADPYFKGLARVEREPSSQPVTKMEFEFERRRITKDDVRELIYREILEYHPNMLKEHLEGAETLGFMYPSAVDHFKKQFAYLEEHYGKGGTVTPPERQHASLPRPCVLYSDNSRQNTAEVVDDLSKCVIKEVEKPAVDRTGGVPMNKIPFHAPQNMQGVMTDRNIAARPRRAVGSALHHNKRGVTLTAAEAEQRRMIRNPSVSAAQYAASSCSYPKRNPSCKNERAEDGIEGSNGLQPKPQYIAQKVVAAAQGGAGGNWH* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1199 570 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 479 - -
Lja4g1199 570 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Lja4g1199 570 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Lja4g1199 570 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1199 570 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Lja4g1199 570 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1199 570 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1199 570 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 479 - -
Lja4g1199 570 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lja4g1199 570 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Lja4g1199 570 MobiDBLite consensus disorder prediction 523 548 - -
Lja4g1199 570 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1199 Lja-Chr4 10639157 10644223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1199 1 570 MAP Kinase Gene Family AT5G19010 76.592 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Lja4g1199 Pkinase 4.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1199 - K04371 gmx:100799442 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1199 4 10639157 10644223 Lja4g1199 4 10639157 10644223 ECH
Lja4g1199 4 10639157 10644223 Lja6g2357 6 52456862 52462815 PCT