Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1198 ATGGTGAGGGTTAGCGTGCTGAACGATGCTCTGAAGAGTATGTACAATGCTGAGAAAAGGGGCAAGCGTCAGGTCATGATCAGACCATCATCCAAAGTCATCATCAAATTTCTCTTGGTTATGCAGAAGCATGGTTACATTGGGGAGTTTGAGTATGTTGATGACCACAGGGCTGGGAAAATTGTGGTTGAATTGAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCGTTTTGATGTTGGTGTCAAGGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCTTCAAGACAGTTTGGGTACATTGTTCTCACCACCTCTGCTGGCATCATGGATCACGAAGAGGCAAGGAGGAAGAATGTTGGTGGCAAGGTCTTGGGCTTCTTCTACTAG 393 0.4656 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1198 130 PANTHER BNAA02G06730D PROTEIN 1 130 - -
Lja4g1198 130 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lja4g1198 130 Gene3D - 70 130 - -
Lja4g1198 130 SUPERFAMILY Ribosomal protein S8 4 130 IPR035987 GO:0003735|GO:0005840|GO:0006412
Lja4g1198 130 Gene3D - 1 69 - -
Lja4g1198 130 ProSitePatterns Ribosomal protein S8 signature. 100 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lja4g1198 130 Pfam Ribosomal protein S8 7 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
Lja4g1198 130 Hamap 30S ribosomal protein S8 [rpsH]. 2 130 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1198 Lja-Chr4 10636079 10637554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1198 1 130 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 97.692 1.74e-93 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1198 K02957 - cpap:110824281 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1198 4 10636079 10637554 Lja6g2358 6 52464157 52466422 PCT