Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1189 ATGGCAAAACCGGTGGTGCTTTGTAGTACACCACCACAAATTGAATCGCTACGACGTTTTGGAATTTTGCCGCCACCAAATGCTCTTCGATTTCCATCGTTTTGCTGCAAAGCCAGCTCCGCCATCCAATGTAATAACATGAGTTCTTCAACCAGAATCTTTATCAAAGGGCTTCCTCAATCAACCTCTGAAGGACGTTTAATGAAGGCGTTTTCAGAGTTCGGTGATGTTACACAAGTCAAGGTTCCAATAGATAAAGAATCAGGGCAATCTTTAGGATATGCATATATTGGGTTTGACAAGGAAGAGTCTGCGAAATCAGCTGTGAAAGAGATGAATGGAAAGTTTTTTGATGGGAGGTTTATTTATGTTACCACCGCAAAGCCTGTATCATCGAAAAGTCAGAAGAGGCCAACTGCCTACAAATTTTAA 432 0.4144 MAKPVVLCSTPPQIESLRRFGILPPPNALRFPSFCCKASSAIQCNNMSSSTRIFIKGLPQSTSEGRLMKAFSEFGDVTQVKVPIDKESGQSLGYAYIGFDKEESAKSAVKEMNGKFFDGRFIYVTTAKPVSSKSQKRPTAYKF* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1189 143 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 36 143 - -
Lja4g1189 143 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Lja4g1189 143 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 36 143 - -
Lja4g1189 143 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 122 IPR000504 GO:0003723
Lja4g1189 143 SUPERFAMILY RNA-binding domain, RBD 45 136 IPR035979 GO:0003676
Lja4g1189 143 Gene3D - 37 142 IPR012677 -
Lja4g1189 143 SMART rrm1_1 52 125 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1189 Lja-Chr4 10565441 10567280 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1189 48 142 Eukaryotic Initiation Factors Gene Family AT4G34110 35.789 9.63e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1189 - - gmx:100791917 164.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1189 4 10565441 10567280 Lja4g1189 4 10565441 10567280 ECH