Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1188 ATGAATATTTTTTCGGTGTTTGCCTCCTCCTCCTACAAGCCTCTAGTGATGAGCAATTTTCAACCTGCGCTCACCACCACCATGGACTCCCTCTTCCACCACAGCAAGGACAAGGTGGTTGTCATCATGGGCGCCACTGGCTCCGGAAAATCCAAGCTGGCAATCGACCTCGCCACACACTTTCCACCGGCGGAGGTTGTCAACTCCGACAAGATACAAATGTATTCCGGCCTCGACATCACAACCAACAAGGTAACCGAGGAAGAGTGTCGTGGGGTCCCACATCATCTTCTCGGAACATTTGAGAATCCCAACATGAATTTCACTGCCAGTGATTTCTGCAAACAAGCTTCCTCCGCCATTGGCTCCATTGTGAAGAGGGATGGCCTTCCCATCATAGCTGGTGGCTCCAACTCCTTCATCGATGCTCTGGTCAACCACACCCCTGAATTCCGCTTCAACTATGAATGCTGCTTCCTCTGGGTCGATGTCTCTCTTCCAGTCCTCCACAATTCCCTCTCCAGACGCGTCGATCGCATGATCGATGCGGGCCAGGTTGATGAGGTGCGTCAATTCTTCCTCAACGCACATCATCAGTCTGACTACACGAGAGGGATAAGACGAGCGATTGGGGTCCCTGAGTTCGACCGCTTTCTGAGAGCGGAGGCCTCAGGGGCCGATGAGAGAACGAAAAGGAAGCTCCTTGACACTGCCATTGCTGAACTCAAGGTGAACAACTGCAACCTGGCGAGCCGCCAGGTTCAGAAGATTCACCGGCTCTACAATATGTGGAAGAGGAGTATGCACCGGCTAGACGCCACCGAGGTTTTGCTCAAGAATGGTTGTTGTTCCCCTGAGGAAGCAGAGAAGGTTTGGGAGGATCACGTGTTTAGCAAAAGTCGCAGGATCATTCAAAAGTTCTTGTACGAGGAAACAACACACCGTGTTGCTTCTAAGAATAATGGTGTGATTTCATCTTCTTCTTCGAATTCAAGTACCCCATCAGCCATGGCTGCGGTAACCCATTAG 1029 0.5121 MNIFSVFASSSYKPLVMSNFQPALTTTMDSLFHHSKDKVVVIMGATGSGKSKLAIDLATHFPPAEVVNSDKIQMYSGLDITTNKVTEEECRGVPHHLLGTFENPNMNFTASDFCKQASSAIGSIVKRDGLPIIAGGSNSFIDALVNHTPEFRFNYECCFLWVDVSLPVLHNSLSRRVDRMIDAGQVDEVRQFFLNAHHQSDYTRGIRRAIGVPEFDRFLRAEASGADERTKRKLLDTAIAELKVNNCNLASRQVQKIHRLYNMWKRSMHRLDATEVLLKNGCCSPEEAEKVWEDHVFSKSRRIIQKFLYEETTHRVASKNNGVISSSSSNSSTPSAMAAVTH* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1188 342 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 31 315 - -
Lja4g1188 342 Gene3D - 36 308 IPR027417 -
Lja4g1188 342 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 31 315 IPR039657 -
Lja4g1188 342 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 166 268 - -
Lja4g1188 342 Pfam IPP transferase 154 255 - -
Lja4g1188 342 Pfam IPP transferase 73 149 - -
Lja4g1188 342 MobiDBLite consensus disorder prediction 320 342 - -
Lja4g1188 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 150 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1188 Lja-Chr4 10552846 10554553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1188 152 312 C2H2 Transcription Factor Family AT2G27760 31.551 7.16e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1188 K10760 - gmx:100778430 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1188 4 10552846 10554553 Lja4g1188 4 10552846 10554553 ECH
Lja4g1188 4 10552846 10554553 Lja6g2367 6 52572787 52574935 PCT