Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1180 ATGGGTGTTTCATGGAGCAACAACAACAGCAACAGAAGAAGGAACAACTACCCTCACGCACCACCACATCTCCCACCTCCTTACTACTACTCTCACCACCCCCACCATCCACAACCGGCACTGCCGCCACCACCGCCGCAAGGCTACTACTACACCTCAACTAACCCTTCCGCCGCTAACTACGTGGCTCCTCCGCAGTTTTACTCAAATGGGTATGCTGCCAATTCCATGCCGGCGCGGTTCCACAACCAGCAGACTCCGTTTTTCGTGAATCCGGGTCAGGGTCAGGGTCAACCCGGTGCTGTTCCTCCTCCCTATGTTGACCATCAAACTGCTAAGAAGATCAGGAATGATGTGAACTTGCATAAACACACTCTGCGCCTTGATTTTGATCCTAACAACCCTGATCACCACTTGATTTCCTTCGTTTTTGATGCTCTTTATGATGGCAGCATCACAATCTACTACTTTGCCAAAGAAGAAGAAAAATGCAGGTTTACTCCACTATTTCCTGAAGCATTTGAGCCAATCACTTTCCCATTTCAGAAAGGAGCTGGCCTGAAGTTTTGTCAGCCTTCAGGAACAGGCATTGACCTAGGTTTCTTTGAGTTGGATGATCTCTCAAAGCCCTCACCAGGAGAAGATGTATTTCCCCTCGTGATATGTGCTGAAACAACTTCAACAACTCCCTTGGAAGATGAAACTCCTGGTATTCCCATTCTAAATGCATCTCCTCACATGCAAATAACTCAAGCTGTCTTAGAGAAAAGCAGTGGTAGTGGTCCATTCCAGGTAAAAGTAGTTAGGCAGATTCTGTGGATTGATGATGTTCGTTATGAGCTGAGAGAGTTATACGGAATAGGAAGCTCAACAGCAGCGGATTTTGATGATAATGATCCTCAGAAGGAATGTGTAATATGCATGACTGAACCCAAGGACACTGCTGTCTTACCTTGCCGACACATGTGTATGTGCAGTGACTGTGCGAAAGAATTACGGTTACAATCAAATAAATGCCCTATATGCCGTCAGCCTATTGAAGAACTTATAGAGATCAAGATAAACAATGGCGACCAATGA 1080 0.4602 MGVSWSNNNSNRRRNNYPHAPPHLPPPYYYSHHPHHPQPALPPPPPQGYYYTSTNPSAANYVAPPQFYSNGYAANSMPARFHNQQTPFFVNPGQGQGQPGAVPPPYVDHQTAKKIRNDVNLHKHTLRLDFDPNNPDHHLISFVFDALYDGSITIYYFAKEEEKCRFTPLFPEAFEPITFPFQKGAGLKFCQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETTSTTPLEDETPGIPILNASPHMQITQAVLEKSSGSGPFQVKVVRQILWIDDVRYELRELYGIGSSTAADFDDNDPQKECVICMTEPKDTAVLPCRHMCMCSDCAKELRLQSNKCPICRQPIEELIEIKINNGDQ* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1180 359 MobiDBLite consensus disorder prediction 1 51 - -
Lja4g1180 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 353 IPR013083 -
Lja4g1180 359 SUPERFAMILY RING/U-box 303 349 - -
Lja4g1180 359 PANTHER MAHOGUNIN 1 358 IPR045194 GO:0061630
Lja4g1180 359 Pfam Zinc finger, C3HC4 type (RING finger) 301 348 - -
Lja4g1180 359 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 303 343 IPR045195 -
Lja4g1180 359 MobiDBLite consensus disorder prediction 1 16 - -
Lja4g1180 359 MobiDBLite consensus disorder prediction 19 50 - -
Lja4g1180 359 SMART ring_2 304 342 IPR001841 -
Lja4g1180 359 ProSiteProfiles Zinc finger RING-type profile. 304 343 IPR001841 -
Lja4g1180 359 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1180 Lja-Chr4 10505285 10508262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1180 106 359 C3H Transcription Factor Family AT3G06140 63.529 2.00e-108 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1180 - - gmx:102665712 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1180 4 10505285 10508262 Lja4g1180 4 10505285 10508262 ECH