Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1178 ATGGCGACAACCTCAGAAACCCATGAATCAATAAAGGAAAAAGCGATTGCTCTTTTGCGTGCCATGAACGCTTCCAGAATCCTCAAAGAGGACGATACTCCTTGCAAAATTCACGAGGGTCTCTTTTTGGGTTCGATTGGCACAGCTAACAACAAGGATGCTTTGAAAAAGGTCAATGTTACTCACGTTTTGACAGTGGCTGGTAAATTGACACCTCCACATCCTGGGGATTTTGTCTACAAAACTATTGATGTTGCTGACAGAGAAGATGTCAACTTAAAAAAATATTTCCACAAGTGTTTTGATTTCATTAATGAAGCCAAAAGTCAAGGTGGAGCTGTTCTGGTTCATTGTTATGCTGGAAGATCAAGGAGTGTTACAATCATTGTGGCATATCTGATGAAGACTCTTGGAATGAGTTTATCTGAAGCTTTGAAACATGTAAAGAGTAAACGACCCCAAGCAGCGCCCAACTCTGGTTTCATGCGTCAGCTGGAGGACTTCGAAAAATCTCTTCAAGGTGCCTCTAAATTGCATTATTTTTGTTTCAAGTGTCTGAGTAGAGAACATGATGGTGATTCATTAGAAAAGGAAGTGTAG 600 0.405 MATTSETHESIKEKAIALLRAMNASRILKEDDTPCKIHEGLFLGSIGTANNKDALKKVNVTHVLTVAGKLTPPHPGDFVYKTIDVADREDVNLKKYFHKCFDFINEAKSQGGAVLVHCYAGRSRSVTIIVAYLMKTLGMSLSEALKHVKSKRPQAAPNSGFMRQLEDFEKSLQGASKLHYFCFKCLSREHDGDSLEKEV* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1178 199 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 95 153 IPR000387 GO:0016311|GO:0016791
Lja4g1178 199 SMART dsp_5 33 171 IPR020422 GO:0006470|GO:0008138
Lja4g1178 199 CDD DSP 34 167 - -
Lja4g1178 199 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 1B 18 175 - -
Lja4g1178 199 Pfam Dual specificity phosphatase, catalytic domain 41 170 IPR000340 GO:0008138|GO:0016311
Lja4g1178 199 ProSiteProfiles Dual specificity protein phosphatase domain profile. 33 174 IPR020422 GO:0006470|GO:0008138
Lja4g1178 199 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 18 175 - -
Lja4g1178 199 Gene3D Protein tyrosine phosphatase superfamily 35 187 IPR029021 -
Lja4g1178 199 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 34 176 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1178 Lja-Chr4 10465405 10468900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1178 23 174 Protein tyrosine phosphatase (PTP) family AT3G06110 55.263 1.98e-60 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1178 - - lang:109352945 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1178 4 10465405 10468900 Lja4g1178 4 10465405 10468900 ECH