Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1166 ATGGACACTCGCACGCTCACACTGTCTCCTCTTCCTCACACTCTGCGTCTTCTTTCATCTCAGAAGCCTCCTCCAACATCCACTTGTTACATTCCTCGTTCACACAGACCCTTCTTCACTACCAACCTTAACCGCATCACAACTCCACAAGCCATCGTTAATCCTTCTCCCATAACCCTTTCAGCGGATGATGCAGCAGTGGCAACTCCCCCTCTCAGGGAATTATGCGAACCTCATGTTCCCAACCACATACTGCAAAGGATGGAAGAGATTGGATATGTTATGCCTACAGATATCCAGAAGCAAGCACTGCCTTATCTTTTTTCCGGGCGTGATTGCATACTTCATGCTCAGACAGGTTCTGGCAAGACTCTTACATACCTGCTTTTGATCTATTCCATCATCAGCGCTAGAAAGTTTTCTGTGCAAGCACTAGTTTTGGTGCCTACTCGTGAACTTGGCATGCAAGTCACTAAGGTTGCTAGGATGTTGGCAGCAAAGCCAACTGGAGTTGAGGGGGAGCAGAAGTCATGTACCGTCATGGCTCTGTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGTTAAAGGCAGAGCCTCCAGCAGTAATAGTCGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACACTTGTTTTCACTCGAAACTGTGAGGGTGCTGGTTGTTGATGAGGTTGACTTTATTTTCAATTCTGCCAAGCAAGTGAGTTCTCTTCGGAAGATTTTGAATTCATCTTGCAATAACCGCCAGACGGTTTTTGCGAGTGCATCTATACCACAACACAATCGATTTCTTCATGACTGTGTTCAGCAGAAATGGACTAAGAGTGATGTGATCCATATTCATGTCAGTCCAGTGGAGCCCATGCCATCTCGCCTATGTCATAGATATATAATATGCGATACAAAAAGAAAGCTACAAACCCTGTTATCCTTGATACAGTCTGACACACCTGAGTCTGGCATTATATTTGTTGGTGAGCAGTCTGAGAAGTCGAAAAAGGCTGGAAATGCTCCATCCACATCCCTTCTCATTGACGTCCTAAAATCATCATATCAAGGTTCTTTAGATATCCTCCTTCTCGAAGATGAAATGAATTTCAACTCACGAGCATCTTCTCTGTTGGAGGTCAGAAAAGGAGGTGGCCATCTCCTTGTGGCAACAGATATAGCTGCTCGAGGAGTTGACCTTCCAGAAATGTCTCACATATACAACTTTGATCTGCCAAGGTCCGCCGTTGATTACCTTCATCGAGCAGGGAGGACTTGTAGAAAACCCTTTTCTGACATCAATTGTACTGTTACCAGCATTATAGTTCCAGAGGAGCGATTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTCATTTGTGAAGAGATTATTCCTTAA 1413 0.443 MDTRTLTLSPLPHTLRLLSSQKPPPTSTCYIPRSHRPFFTTNLNRITTPQAIVNPSPITLSADDAAVATPPLRELCEPHVPNHILQRMEEIGYVMPTDIQKQALPYLFSGRDCILHAQTGSGKTLTYLLLIYSIISARKFSVQALVLVPTRELGMQVTKVARMLAAKPTGVEGEQKSCTVMALLDGGTLRRHKSWLKAEPPAVIVATVGSLCQMLERHLFSLETVRVLVVDEVDFIFNSAKQVSSLRKILNSSCNNRQTVFASASIPQHNRFLHDCVQQKWTKSDVIHIHVSPVEPMPSRLCHRYIICDTKRKLQTLLSLIQSDTPESGIIFVGEQSEKSKKAGNAPSTSLLIDVLKSSYQGSLDILLLEDEMNFNSRASSLLEVRKGGGHLLVATDIAARGVDLPEMSHIYNFDLPRSAVDYLHRAGRTCRKPFSDINCTVTSIIVPEERFVLQRYENELMFICEEIIP* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1166 470 SMART ultradead3 92 300 IPR014001 -
Lja4g1166 470 CDD DEADc 84 277 - -
Lja4g1166 470 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 104 284 IPR014001 -
Lja4g1166 470 Gene3D - 298 467 IPR027417 -
Lja4g1166 470 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 470 IPR001650 -
Lja4g1166 470 Pfam DEAD/DEAH box helicase 97 268 IPR011545 GO:0003676|GO:0005524
Lja4g1166 470 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 468 - -
Lja4g1166 470 SMART helicmild6 350 434 IPR001650 -
Lja4g1166 470 Gene3D - 71 286 IPR027417 -
Lja4g1166 470 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 46 468 - -
Lja4g1166 470 CDD SF2_C_DEAD 303 432 - -
Lja4g1166 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 436 IPR027417 -
Lja4g1166 470 Pfam Helicase conserved C-terminal domain 313 432 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1166 Lja-Chr4 10384268 10395708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1166 84 459 Eukaryotic Initiation Factors Gene Family AT1G72730 26.943 4.13e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1166 - - gmx:100786205 743.036