Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja4g1161 | ATGTTAGACAATACTGCTTCTTCTTCTGGTGCACCATCTTCTTCTGATATTGCTGCTTTTGCATTATCAGAAAATGGAGTGCTTAACAACAAAAGAAAAAGAAGACCAGCAGGCACACCAGATCCAGATGCTGAGGTGGTGTCCCTCTCACCCAAGACCTTACTAGAATCAGACAGGTATGTGTGTGAGATCTGCAACCAAGGCTTTCAGAGGGACCAGAATCTGCAAATGCACAGGAGAAGGCACAAGGTGCCATGGAAACTCCTGAAAAGAGAAACCACACAAGGGCAGAAGAAAAGGGTGTTTGTGTGCCCTGAGCCAAGTTGTTTGCACCATGACCCTTGCCATGCCCTTGGTGACCTTGTTGGAATCAAGAAACACTTCAGGAGGAAGCACAGCAATCACAAGCAGTGGGTTTGTGACAAATGTAACAAAGGGTATGCTGTGCAATCTGATTACAAGGCGCATGTCAAAACATGTGGTACCAGAGGGCACTCGTGTGACTGTGGCCGTGTGTTTTCCAGGGTGGAGAGTTTCATAGAACATCAAGATACATGCAATATGCGGCTGCCACGGCAAGAGTTACAAGCACTTCAACCTGCATGCTCTTCTAGAACAGCTTCAAGCACAAGTCCATCAAATGAGGCCAATTTTAGCATAGCCCCATTGCAAGGACTTCCACTGCCAAAACCACCACCAGCTGATCAGCCATCAACTTCAAACACACACAACTTAGAACTTCAGCTCTTATCACCTTCTTCAACAATCCCCAAAGAAAATAGAAATCCCAGGGAAAACCATAATGAGACCCGTTTGAAGCTCTCAATAGGTTCATGTACTAATAATGATGGTCACATAGGGAATGAAGAATCAGAAAGGAATAATAATAATAATGTTGTGGGTGATAATTCCATTTTCGAAGTGGCAAGGCTGAAAGAGTTTGCTGGTGAGGAACTCAAGTTGGCGATGGCGGAGAAGGCTTACGCGGAAGAGGCTAGGAGAGAAGCGAAGCGCCAAATTGAGATAGCTGAGGTTGAGTTTGAGAATGCTAAGAGGATAAGGAAACAAGCGCAAGCTGAGCTTGGAAAAGCTGAAGATTTGAGAAAGCAAGCAATGAAGAAGATTAGCTCCACTGTTATGGAAATAACTTGTCAAGCTTGCAAGCAGCAGTTTCAGAACTCAACTGTTGCATCAGATCAAGAAACTTCCATTGTGGTGAGTTACGTGTCCTCAGCCAACACAGAAGGCGAAGCTGCAGAAGAATGA | 1266 | 0.4494 | MLDNTASSSGAPSSSDIAAFALSENGVLNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETTQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCNKGYAVQSDYKAHVKTCGTRGHSCDCGRVFSRVESFIEHQDTCNMRLPRQELQALQPACSSRTASSTSPSNEANFSIAPLQGLPLPKPPPADQPSTSNTHNLELQLLSPSSTIPKENRNPRENHNETRLKLSIGSCTNNDGHIGNEESERNNNNNVVGDNSIFEVARLKEFAGEELKLAMAEKAYAEEARREAKRQIEIAEVEFENAKRIRKQAQAELGKAEDLRKQAMKKISSTVMEITCQACKQQFQNSTVASDQETSIVVSYVSSANTEGEAAEE* | 422 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja4g1161 | 421 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 62 | 82 | IPR013087 | - | |
Lja4g1161 | 421 | Gene3D | Classic Zinc Finger | 38 | 104 | - | - | |
Lja4g1161 | 421 | Pfam | Zinc finger, C2H2 type | 60 | 82 | IPR013087 | - | |
Lja4g1161 | 421 | Gene3D | Classic Zinc Finger | 123 | 200 | - | - | |
Lja4g1161 | 421 | MobiDBLite | consensus disorder prediction | 200 | 220 | - | - | |
Lja4g1161 | 421 | SUPERFAMILY | beta-beta-alpha zinc fingers | 59 | 158 | IPR036236 | - | |
Lja4g1161 | 421 | PANTHER | OS03G0310200 PROTEIN | 1 | 418 | IPR039288 | GO:0009630 | |
Lja4g1161 | 421 | MobiDBLite | consensus disorder prediction | 24 | 48 | - | - | |
Lja4g1161 | 421 | PANTHER | ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 | 1 | 418 | - | - | |
Lja4g1161 | 421 | Coils | Coil | 319 | 374 | - | - | |
Lja4g1161 | 421 | SMART | c2h2final6 | 102 | 132 | IPR013087 | - | |
Lja4g1161 | 421 | SMART | c2h2final6 | 138 | 165 | IPR013087 | - | |
Lja4g1161 | 421 | SMART | c2h2final6 | 60 | 82 | IPR013087 | - | |
Lja4g1161 | 421 | MobiDBLite | consensus disorder prediction | 237 | 259 | - | - | |
Lja4g1161 | 421 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 60 | 82 | IPR013087 | - | |
Lja4g1161 | 421 | MobiDBLite | consensus disorder prediction | 200 | 270 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja4g1161 | Lja-Chr4 | 10311981 | 10315042 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja4g1161 | 24 | 417 | C2H2 Transcription Factor Family | AT2G01940 | 59.048 | 9.03e-156 | 446 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lja4g1161 | zf-C2H2 | 0.0039 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja4g1161 | K25871 | - | gmx:100806138 | 595.119 |