Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1129 ATGATAAACAGAAAAGTCTGCTATAATACATCATTTCAATCATTCACAGATTTATCAACCTTCCCTTATAGAAATGTGTATTTCACCAAGCCTCTCTTGCCTAGATCGTTACGCCTTTCGTGGGGGTCAGAACCTTTGATTTCTCATCTTCTTTTGGTTTTTCTCATGGATGATCATCTTCACATGATTTCCTCATTCCTTACACCAATATTCACCCTCTCCTTCTTCTTCTTATTCGTGATCACCTTGCCTACATTATCAATTTGCCAAGAACATAACAAATATGAAGTGTGTACCACGCCATACACATGTGGAGAATTAACCAACATCTATTACCCTTTTTGGGGAGATACCAGACCAAGTTACTGTGGTAGAAACAAGCAATTTGAGATCAAGTGTGAAGGGAATCAAAACACCTCAATTCAAATAGGTTCACAAAGTTTCAAAGTTCTGCAAATCGATCAACTCGGTTACACTATGAGAATGGCTCGAAAAGGCCTTGTCTATGATCATTGCTCTTCTGGTTTGAGCAACACTTCTTTGAACTCAGAATTCTTCCATTACATGCCAAATGTAACGAGCATCACCATCTTCTATGACTGCCCTGAAACTGCGCTTCGAAACGGCAGAAACTCGTTCCCCTGCAAGGAAGGAATGAACAAGAGTGCTGTCTATGTGGATCATGCAACTGCAGAACAAGTTCAGAACTGTAGAGGAGTTAGTATTGAAGTGAAGTTGTCACATGAAGTGGACGATAACGTTGGAGGAATTGAAGGGCTGAACAAAGCTTTGGATGCTGGATTTGATGTGAATTATGATTCAGGCTATCAAGTATGCTTGAGATGTCTTTTGAGTAATGGAACCTGCGGATCCAATGATAAGTCTCAGTTTTCATGCTATTGCAAGGATGGATCTGAAGCTTCAGATTGTTCTCATCATCACAGCAGTCAATGGAATTGGAAAAGGAAGGTTGGTGTAGGTGTCACTGCTGCTGTGGTCAGTGGAGTTGCTGTAGGCCTTGCCATATACATCTACTATAGGCAAAAGAAGAAGAAGAAGAAGATTCTTCTTGCAGTATCATCTGTACTATCTAAGAGCTTCTCTTCTGGTACTTCTTTAGAAGACATTGAGAGAGGACATAAATACCCTGGACTACACTACTTCACCTATAATGAACTCGAAGAGGCCACAAACAACTTTGACTCAGCCAGAAAACTAGGAGATGGAGGCTTTGGGACTGTGTATTTTGGAAAACTTCAAGATGAGCGTTTGATTGCGGTGAAAAGGATGGCTGAGAACAGTTGGAGGAGAGTTGAGCAATTCATGAATGAAGTTGAGAACTTAACTGGACTACACCACCAAAATCTTGTGTCATTATATGGATGTACTTCTCGCCACAGTCGCGAACTTCTGCTTGTCTATGAGTATGTTCCTAATGGAACTGTTGCTGATCACATTCATGGTCCACAAGCAAAACCTGGCCAACTTTCCTGGCATATCAGAATGAACATCGCCATAGAGACCGCAAGTGCATTGGTATATCTTCACGCTACTGACATCATTCACAGAGATGTGAAAACTAGGAACATTCTCCTTGACAATCACTATAGTGTCAAAGTAGCCGATTTTGGACTTTCGCGTCTTTTACCGGACCATCTCACTCACATTTCAACAGCTCCACAAGGGACTCCAGGTTATGTGGATCCAGAATACAATGAGTGCTACCAGCTTACTGACAAGAGTGATGTTTATAGCTTTGGAGTTGTGCTGATTGAGCTAATATCATCCATGCCTGCTGTTGATATCTCTAGGGAAAGACGTGAAATCAAATTGTCTACCATGGCCATTAAGAAGATTAGGAATGGGACATTACATGAACTCGTGGACTCGAACCTTGGGTTTGAATCGGATTTCAAGGTAAGGAAAATGATCAATGCCGTGGCGGAGTTAGCATTTCAGTGTTTGCAGAGTTCTAAAGATGTGAGGCCTAGTATGGCTGAAGTGCTAGAAAGGCTAAGGGATATACAGAGTGATGGGAAATATGAAAGCAAACCTGAGGTGATGGATATCCCTGAAGATGATGCTGCTTTGCTCAAGTATGAGCCACCACAATCACCAGATTCAAATTTGAGGAACATATCTACTCCACCAAATCGAAGCGAATAA 2166 0.4146 MINRKVCYNTSFQSFTDLSTFPYRNVYFTKPLLPRSLRLSWGSEPLISHLLLVFLMDDHLHMISSFLTPIFTLSFFFLFVITLPTLSICQEHNKYEVCTTPYTCGELTNIYYPFWGDTRPSYCGRNKQFEIKCEGNQNTSIQIGSQSFKVLQIDQLGYTMRMARKGLVYDHCSSGLSNTSLNSEFFHYMPNVTSITIFYDCPETALRNGRNSFPCKEGMNKSAVYVDHATAEQVQNCRGVSIEVKLSHEVDDNVGGIEGLNKALDAGFDVNYDSGYQVCLRCLLSNGTCGSNDKSQFSCYCKDGSEASDCSHHHSSQWNWKRKVGVGVTAAVVSGVAVGLAIYIYYRQKKKKKKILLAVSSVLSKSFSSGTSLEDIERGHKYPGLHYFTYNELEEATNNFDSARKLGDGGFGTVYFGKLQDERLIAVKRMAENSWRRVEQFMNEVENLTGLHHQNLVSLYGCTSRHSRELLLVYEYVPNGTVADHIHGPQAKPGQLSWHIRMNIAIETASALVYLHATDIIHRDVKTRNILLDNHYSVKVADFGLSRLLPDHLTHISTAPQGTPGYVDPEYNECYQLTDKSDVYSFGVVLIELISSMPAVDISRERREIKLSTMAIKKIRNGTLHELVDSNLGFESDFKVRKMINAVAELAFQCLQSSKDVRPSMAEVLERLRDIQSDGKYESKPEVMDIPEDDAALLKYEPPQSPDSNLRNISTPPNRSE* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1129 721 MobiDBLite consensus disorder prediction 680 721 - -
Lja4g1129 721 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 73 710 - -
Lja4g1129 721 MobiDBLite consensus disorder prediction 680 696 - -
Lja4g1129 721 ProSitePatterns Serine/Threonine protein kinases active-site signature. 520 532 IPR008271 GO:0004672|GO:0006468
Lja4g1129 721 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 73 710 IPR044652 -
Lja4g1129 721 Gene3D Phosphorylase Kinase; domain 1 372 476 - -
Lja4g1129 721 MobiDBLite consensus disorder prediction 705 721 - -
Lja4g1129 721 Gene3D Transferase(Phosphotransferase) domain 1 477 694 - -
Lja4g1129 721 Pfam Protein tyrosine and serine/threonine kinase 403 672 IPR001245 GO:0004672|GO:0006468
Lja4g1129 721 SUPERFAMILY Protein kinase-like (PK-like) 380 672 IPR011009 -
Lja4g1129 721 ProSitePatterns Protein kinases ATP-binding region signature. 406 428 IPR017441 GO:0005524
Lja4g1129 721 Pfam Wall-associated receptor kinase C-terminal 220 304 IPR032872 -
Lja4g1129 721 ProSiteProfiles Protein kinase domain profile. 400 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1129 721 Pfam Wall-associated receptor kinase galacturonan-binding 98 163 IPR025287 GO:0030247
Lja4g1129 721 SMART serkin_6 400 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1129 Lja-Chr4 9947694 9951109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1129 102 720 Receptor kinase-like Gene Family AT1G25390 42.229 5.52e-146 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lja4g1129 PK_Tyr_Ser-Thr 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1129 - - lja:Lj4g3v2412600.1 1196.8