Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1109 ATGAGGAGGAATTTGAATTTAGAACTTCAACTCTTCCCTCCCTCTCATTCCGATCTTCGCCCCATAAATGATGAAGAAGAAGCCAGAGAGAGCCAACAACAAGACCACAGCCACCAGCAGCAACAACAACACCGGCCGCTCACCATTTTCTATGGTGGCAAGACTTGCGTCCGTGATGTCACAGAAATTCAGGCCAGATCAATTTTAATGGTTGCACATAAAGAGATCATGGAGGAAAGAGTGAGGACACCAACAGCAACAACAACATCAACAGGGTCATCACCAGTAATACCGCAGTCACATCAAAACTTGAACAGCCCTTGCACGAGTCATTACATGCAAAAATCGCTGCAGAGGTTTCTCCAGAAGAGGAAGAATCGGGCCCAAGAAGCATCCCCATACAATGTTAGGTCAAATGAGCAAAATCATGATAGAACAAATGAAAATTAA 450 0.4444 MRRNLNLELQLFPPSHSDLRPINDEEEARESQQQDHSHQQQQQHRPLTIFYGGKTCVRDVTEIQARSILMVAHKEIMEERVRTPTATTTSTGSSPVIPQSHQNLNSPCTSHYMQKSLQRFLQKRKNRAQEASPYNVRSNEQNHDRTNEN* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1109 149 PANTHER - 1 134 - -
Lja4g1109 149 MobiDBLite consensus disorder prediction 82 119 - -
Lja4g1109 149 MobiDBLite consensus disorder prediction 80 149 - -
Lja4g1109 149 MobiDBLite consensus disorder prediction 1 46 - -
Lja4g1109 149 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 134 IPR040390 -
Lja4g1109 149 ProSiteProfiles Tify domain profile. 40 74 IPR010399 -
Lja4g1109 149 MobiDBLite consensus disorder prediction 19 34 - -
Lja4g1109 149 Coils Coil 22 42 - -
Lja4g1109 149 Pfam tify domain 42 72 IPR010399 -
Lja4g1109 149 Pfam Jas motif 115 134 IPR018467 -
Lja4g1109 149 SMART tify_2 40 74 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1109 Lja-Chr4 9723154 9726747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1109 1 137 Tify Gene Family AT1G30135 39.437 3.19e-18 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lja4g1109 tify 2.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1109 - - gmx:100781356 137.117