Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1102 ATGGAGGAGGATGAGATTCATGGACATGCTTGCAAGTTGCCAAGACTTGGTGGAAATGGAAGAAATGAGCCTAACAAGATAGGTCCTAGAAGAGGGAATGAGGAAGAGGATGGAGGAGGAGGAAAAAATGGTGGCAGCAACACAAACAGGTTCAGCAATTGGAACCACCACTCCTCAAGAATCATTAGAGTTTCTAGAGCATCTGGGGGGAAAGACAGGCACAGCAAGGTCATGACTTCAAAGGGTTCAAGAGACAGAAGGGTTAGGCTATCTGTTACCACAGCTATTCAGTTCTATGACCTTCAAGATCGATTGGGTTATGACCAGCCAAGTAAAGCTGTAGAGTGGTTGATAAAATCTGCTGCTGATGCCATTGCTGAGCTTCCTTCCCTGCCTGAAACGCCAGAGCAGCAAAGTCATGAGAGAAGAGGACAAGGGTTTGATGATTCAGCTGATGCAGAGGTGGAACTAGAGGGTACTGAGACAAGTTTTCATCATCAGCAAAACCAGAACCAAAACCAAAACCAGAGCCAGAACCTTTCTTTGTCAAAATCTGGTTGTAGCAGCACCTCAGAGACAAGCAAAGGCTCTGGTTTGTCCCTCTCCAGGTCTGACATTCGTGTGAACCGTGTCAAGGCTAGAGAGAGAGCAAGGGAAAGAGCTTCCAAGGAGAAAGAGAAGGAAAAGGAGAATGATTCACACATTGCTCAGCACCACCAACACCACCAACAACACAACAATGTGAACCCCATTTCTCAAACAGCTTCTTTCACTGAGCTGCTAACAGGTGGAATCAGCAGTGCAGTTCCCACAACAACAGGGCCAGTTCATCAGAACAACAACCAGCAATGGTGTTCTTCTTCATCAGCAGCACCAATGGATTACTTCACTTCAGGGCTTCTTGGTCCTCCTTCTTCCACTTCAAGAACCCAACACCATCATCACCAACAACATTCTTCAGGGTTCTCAATCTCAAATATCCAATTGGGGCACTCACATTCCCTTGCTGAAGCCATGTCAGTTTCACTACCATTCAATGGTGAAAACCATTCCTCTGCATCAGACCAGATGCACCAGCAATTCTCCTTCATCCCTGATCATCACCTCATGCCAGCAACAGCAGCTGTGGTTACTTCTTCTTCTGCTTCTCAGGCCACCGGGAACGGTTACAACCTCGATTTCAGCATCTCTTCGGCAGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCTTTTCTGCAGAGGTTTTCACCTTTAGACGGATCCACTGTACCATTCTTCCTTGGAGGAGCAGCTGCTACTGCTCCTGCCATGGAGAACCACCACCACCACCACAACCTTCAGTTTTCACCTGTTTTTGATGGCGGCAGCTTGCAGCTTTACTATGGCGACGGATGCCGGCATTCAGATCAGAAGGGGAAGGCTAAAAACTGA 1446 0.4765 MEEDEIHGHACKLPRLGGNGRNEPNKIGPRRGNEEEDGGGGKNGGSNTNRFSNWNHHSSRIIRVSRASGGKDRHSKVMTSKGSRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSAADAIAELPSLPETPEQQSHERRGQGFDDSADAEVELEGTETSFHHQQNQNQNQNQSQNLSLSKSGCSSTSETSKGSGLSLSRSDIRVNRVKARERARERASKEKEKEKENDSHIAQHHQHHQQHNNVNPISQTASFTELLTGGISSAVPTTTGPVHQNNNQQWCSSSSAAPMDYFTSGLLGPPSSTSRTQHHHHQQHSSGFSISNIQLGHSHSLAEAMSVSLPFNGENHSSASDQMHQQFSFIPDHHLMPATAAVVTSSSASQATGNGYNLDFSISSAGLAGFNRGTLQSNSPSFLQRFSPLDGSTVPFFLGGAAATAPAMENHHHHHNLQFSPVFDGGSLQLYYGDGCRHSDQKGKAKN* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1102 481 ProSiteProfiles R domain profile. 207 225 IPR017888 -
Lja4g1102 481 MobiDBLite consensus disorder prediction 302 321 - -
Lja4g1102 481 MobiDBLite consensus disorder prediction 207 239 - -
Lja4g1102 481 MobiDBLite consensus disorder prediction 160 245 - -
Lja4g1102 481 ProSiteProfiles TCP domain profile. 70 128 IPR017887 -
Lja4g1102 481 MobiDBLite consensus disorder prediction 162 204 - -
Lja4g1102 481 PANTHER TRANSCRIPTION FACTOR TCP24 1 481 - -
Lja4g1102 481 Coils Coil 211 231 - -
Lja4g1102 481 MobiDBLite consensus disorder prediction 66 86 - -
Lja4g1102 481 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 481 IPR005333 GO:0003700
Lja4g1102 481 MobiDBLite consensus disorder prediction 42 62 - -
Lja4g1102 481 Pfam TCP family transcription factor 69 227 IPR017887 -
Lja4g1102 481 MobiDBLite consensus disorder prediction 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1102 Lja-Chr4 9673995 9681464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1102 49 481 TCP Transcription Factor Family AT4G18390 45.969 4.57e-84 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja4g1102 TCP 4.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1102 - - lang:109362619 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1102 4 9673995 9681464 Lja4g1102 4 9673995 9681464 ECH