Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1091 ATGGCGGAAGAAAAGCAACGAAGCATCCCAGTGCTACCATGGATGCGAGACCCCATCGACGTCACTCTCTGCCAACAACTCCCTCTCGATTCCATCCCTCTCCTCCACCCAAAGTTAAAATCAGCACTAGAGAGCATGGGAATCTCAAGCCTCTTCCCGGTGCAACTCGCCGTCTGGCAAGAAACCGTCGGCCCGGGCAACTTCGACCGCGACCTCTGCGTTAACTCGCCCACCGGAAGCGGTAAAACCTTGGCCTACGCTCTCCCCATCGTGCAGATGCTGTCCACGCGCGTCGCCAAGTGCCTACGCGCTCTGGTTGTGGTTCCCACGCGCGACCTCGCGTTTCAGGTTAAGCGGGTGTTCGATGGCGTCGCGTCGCCGCTCGGGTTGCGTGTCGGATTGGCCGTTGGACAGTCTTCGGTGGCGGACGAGATTTCGGAGCTTGTTCACGTGCCGGCGCGTGAGGCTGGCTCTTGTTATGATCCGCAGCATGCTTTGTTTGTTAGGTTTGAAAGCAAGGTGGATATTCTGGTAGCTACCCCTGGAAGGCTCATGGATCATATCAATACCACTAAGGGATTCACACTTGAACATCTTCATTATCTTGTGGTTGATGAAACAGATCGACTGCTTCGGGAGGCTTACCAGTCATGGCTGCCTACTGTACTTGAATTGGCCCAATCTAATGATGATAGCTTTTCTCAACCAGCTGATTCCTTTTTCCCTTGTTCTGTTGGTGCATTGAGAACCAGAAGAAGATGTGGAGTTGAGAGGGGGTTCAAGGATAAGCCTTACCCCAGGCTGGCAAAGATGGTTCTATCTGCAACAATAACTCAGGATCCAGGAAAGCTTGTTCAACTTAATTTGCATCACCCTTTATTCCTGAGAGCTGGGCAAATGCGTTATCGACTTCCAGAAAATTTGGAATCTTACAAACTGATCTGTGAAACAAAGGTCAAACCCTTGTATTTGGTTGCCCTGTTGAAATCCCTGGGAGGAGAAAAATGCATAGTTTTTACAAAATCAGTGGAATCAACACATCGACTCTGCAAATTGCTGAATTGTTTTGAAGATCTGCAAATTGATATGAAGGAGTATTCTGGTCTTCAGCATCAATGTGTAAGAAGTAAGACATTGACTGCTTTTCGGAAAGGGGAATTTCAAGTCTTAGTATCTTCTGATGCGATGACACGTGGAATGGATGTTGAAGGGGTAAGGAATGTCATTAATTATGACATGCCCAAATACATAAAGACTTATGTTCATCGAGCTGGCAGGACTGCGAGAGCTGGTCAGACTGGGCGTTGCTTCACATTGATGTCAAAAGATGAGGTTCGACGATTTAAGAAGTTGATGCAAAAGGCTGAGGCTGGCTCTTGTGAGGAGCATATTCTTCCATCCAGTTTGATTGATGCACTTCATACCACCTACCAATCAGCACTGGAAAAATTTAAGGAGATACTTTCGGAGAGACGAAAGAAACCCAAGGAACACTCTTCTCAGCCGACCAAAGAGAATGGCAAAAAAAATCATTCATAG 1539 0.4769 MAEEKQRSIPVLPWMRDPIDVTLCQQLPLDSIPLLHPKLKSALESMGISSLFPVQLAVWQETVGPGNFDRDLCVNSPTGSGKTLAYALPIVQMLSTRVAKCLRALVVVPTRDLAFQVKRVFDGVASPLGLRVGLAVGQSSVADEISELVHVPAREAGSCYDPQHALFVRFESKVDILVATPGRLMDHINTTKGFTLEHLHYLVVDETDRLLREAYQSWLPTVLELAQSNDDSFSQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLNLHHPLFLRAGQMRYRLPENLESYKLICETKVKPLYLVALLKSLGGEKCIVFTKSVESTHRLCKLLNCFEDLQIDMKEYSGLQHQCVRSKTLTAFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGQTGRCFTLMSKDEVRRFKKLMQKAEAGSCEEHILPSSLIDALHTTYQSALEKFKEILSERRKKPKEHSSQPTKENGKKNHS* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1091 512 Gene3D - 306 511 IPR027417 -
Lja4g1091 512 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 473 IPR001650 -
Lja4g1091 512 SMART helicmild6 347 431 IPR001650 -
Lja4g1091 512 Pfam DEAD/DEAH box helicase 53 283 IPR011545 GO:0003676|GO:0005524
Lja4g1091 512 CDD SF2_C_DEAD 308 439 - -
Lja4g1091 512 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 295 IPR014001 -
Lja4g1091 512 SMART ultradead3 47 311 IPR014001 -
Lja4g1091 512 Pfam Helicase conserved C-terminal domain 320 431 IPR001650 -
Lja4g1091 512 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 28 476 - -
Lja4g1091 512 PANTHER RNA HELICASE 28 476 - -
Lja4g1091 512 CDD DEADc_DDX51 39 295 - -
Lja4g1091 512 MobiDBLite consensus disorder prediction 488 512 - -
Lja4g1091 512 Gene3D - 20 298 IPR027417 -
Lja4g1091 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 453 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1091 Lja-Chr4 9573932 9580475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1091 57 446 Eukaryotic Initiation Factors Gene Family AT3G13920 23.174 1.31e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1091 K14807 - csv:101217879 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1091 4 9573932 9580475 Lja4g1091 4 9573932 9580475 ECH