Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1086 ATGAAACTCTCTTCAGCTGGTTTTAGTTCTCCACCCCAGGAAGGAGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTACCAGCTGTAGGAAGCCGCGTAGTCTACTTTCCACAAGGTCACAGTGAACAGGTTGCTGTATCTACCAACAGGGAAGTGGATGCTCACATCCCCAACTATCCAAGTTTACCTCCCCAACTTATCTGTCAACTTCATAATGTGACTATGCATGCAGATACTGAGACAGACGAAGTATACGTGCAGATGACCTTGCAACCTCTGAATCCTGAAGAGCAGAAGGAGGGATACCTTCCAGCAGAGTTGGGGACAGCGAGTAAACAGCCAACAAATTATTTCTGCAAAATTTTGACGGCCAGTGATACAAGCACTCATGGGGGATTCTCTGTTCCTCGCCGGGCAGCTGAAAAAGTTTTTCCTCCATTGGACTTTTCACAGCAGCCTCCTTGTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGTGGCCAGCCGAAAAGGCATCTACTTACAACAGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTAGTTGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAATGAATTGCTTCTCGGCATTCGGCATGCTAATAGACCACAACCTATGATGCCTTCATCGGTGCTGTCAAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTATAACCCGCGTACTAGCCCATCAGAATTTGTCATACCTTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTATTTGAAACAGAGGAATCTAGTGTGCGGCGATATATGGGCACGATAACTAGCATTAGTGACATGGATTCTTCCCGGTGGCCAAATTCACATTGGCGCTCCGTCAAGGTTGGCTGGGATGAATCCACAGCAGGTGAGAGGCAACCTCGAGTATCTCTATGGGAAATTGAGCCATTAACAACATTTCCAATGTACCCATCTCCATTCCCCCTTAGGCTCAAAAGACCATGGCCTCCAGGAATGCCTTCATTCCATGGCTTGAAGGATGAAGATTTTGGCTTAAATCCTTCTCTATTGTGGCTTCGAGACGCAGATAGAGGACTTCCGTCTCTAAATTTTCAGGGGATTGGTGTTGGTCCTTGGATGCAGCCACGACTTGATCCCTCCATGGTTAATTTCCAATCAGATACATACCAAGCTATGGCTGCAGCTGCACTTCAGGATATGAGGGCTTTAGATCATTCCAAACAGCGTCACGCTTCTTTACTTCAATTTCAGCAACCCCAGAACATCCCGAACCAGATGTTTCAGCAGTCTCAACCTCAGCAGGCCTTTCCAAATAATCAAGAAAATCAACATCGATCTCCATCTCAGGCTCAAAGTCAAACACATTTCCAGAATCATCTACAGCATCAGCACTCATTCAATGATCAGTTGCAGCAACAACTGCAACAGCAACAGCAAGTGTTAGATCATCAGCAGATTTCAAGTTCTGTATCTACAATGTCTCAGTTTGTTTCAGCACCTCAATCTCAATCACAACCTGTCCAGGCTATTTCTTCGCTTGGCCATCAGCAATGTTATTCTGATTCTAATGGGAACCCGGTAACTACCACTGTAGTTTCTCCCCTGCATAGTATATTGGGTTCATTTCCCCAAGATGAAACATCTCACCTTCTCAACCTTCCTACTAGAACAAACTCTTGGGTTCCTGTTCAACCTTCTACTGCATCATGGCCCTCCAAGCGTGTTGCAATGGACCCTCTCCTTTCTTCTGGAGCATCTCAATGTATTACCTTGCCGCCATTTCCTGGTAGGGAATGTACAATAGAAGGAAGTGCTGATCCACAAAACCTTTTATTTGGTGTTAACATAGAGCCCTCCTCACTTCTAATGCATAACGGGATGTCAAGCCTTAAGGGGATCAGCAGCAATAGTGGCTCATCAACCATACCTTTTCAATCTTCTAGGTATCTGAATACCACAGGCAATGATTCTTCATTGAATCCTGGATTGACACAAAGTATTGGTGAATCAGGCTTCCTGCAAGCTCCAGAAAATGGAGATCAAGGAAACTCACCTTCCAGAACCTTTGTGAAGGTTTACAAGTCAGGGTCCTTCGGAAGATCGTTGGATATCACGAAATTCTCCAACTACCACGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCCTTGAAGGTGAGTTGGAGGTCCCTGTAAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGATGTTCTTCTTCTTGGTGATGGCCCCTGGCCGGAATTTGTAAATAGTGTCGGGTGCATCAAGATACTTTCCCCTGAGGAAATGCAGCAAATGGGAAACAATGGCCTTGGGCTTCTGAACTCCGTTCCAATTCAGAGGCTCTCTAATGGCTTCTCTGATGACTACACTGGCCCTGACGACCCTAGAAATTCAAGCTCTGGGATAACAACCGTGGGGTCTTTAGACTACTGA 2610 0.4552 MKLSSAGFSSPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNREVDAHIPNYPSLPPQLICQLHNVTMHADTETDEVYVQMTLQPLNPEEQKEGYLPAELGTASKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPCQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNELLLGIRHANRPQPMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRTSPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITSISDMDSSRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGMPSFHGLKDEDFGLNPSLLWLRDADRGLPSLNFQGIGVGPWMQPRLDPSMVNFQSDTYQAMAAAALQDMRALDHSKQRHASLLQFQQPQNIPNQMFQQSQPQQAFPNNQENQHRSPSQAQSQTHFQNHLQHQHSFNDQLQQQLQQQQQVLDHQQISSSVSTMSQFVSAPQSQSQPVQAISSLGHQQCYSDSNGNPVTTTVVSPLHSILGSFPQDETSHLLNLPTRTNSWVPVQPSTASWPSKRVAMDPLLSSGASQCITLPPFPGRECTIEGSADPQNLLFGVNIEPSSLLMHNGMSSLKGISSNSGSSTIPFQSSRYLNTTGNDSSLNPGLTQSIGESGFLQAPENGDQGNSPSRTFVKVYKSGSFGRSLDITKFSNYHELRSELARMFGLEGELEVPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVGCIKILSPEEMQQMGNNGLGLLNSVPIQRLSNGFSDDYTGPDDPRNSSSGITTVGSLDY* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1086 869 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Lja4g1086 869 Coils Coil 516 536 - -
Lja4g1086 869 Gene3D - 125 228 IPR015300 -
Lja4g1086 869 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 849 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja4g1086 869 ProSiteProfiles PB1 domain profile. 736 820 IPR000270 GO:0005515
Lja4g1086 869 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Lja4g1086 869 MobiDBLite consensus disorder prediction 476 526 - -
Lja4g1086 869 MobiDBLite consensus disorder prediction 843 869 - -
Lja4g1086 869 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Lja4g1086 869 SUPERFAMILY beta-sandwich domain of Sec23/24 464 581 - -
Lja4g1086 869 PANTHER AUXIN RESPONSE FACTOR 1 849 - -
Lja4g1086 869 MobiDBLite consensus disorder prediction 702 735 - -
Lja4g1086 869 SUPERFAMILY CAD & PB1 domains 733 812 - -
Lja4g1086 869 Pfam AUX/IAA family 729 821 IPR033389 -
Lja4g1086 869 Gene3D - 291 363 - -
Lja4g1086 869 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja4g1086 869 CDD B3_DNA 126 222 IPR003340 GO:0003677
Lja4g1086 869 Gene3D - 732 825 - -
Lja4g1086 869 SMART B3_2 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1086 Lja-Chr4 9513810 9523879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1086 1 482 B3 DNA Binding Superfamily AT1G30330 83.162 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja4g1086 AUX_IAA 1e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1086 - - gmx:100777789 1470.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1086 4 9513810 9523879 Lja4g1086 4 9513810 9523879 ECH
Lja6g0256 6 5565086 5580970 Lja4g1086 4 9513810 9523879 PCT