Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1083 ATGGGTCGCAGGAAGATTGAGATCGCGTTGGTGAATGATCCCAACACAAGGCAAGTCACATTCTCGAAGCGACGATCGGGCTTATTCAAGAAAGCAAATGAGTTATCAATTTTGTGCGGATCGGAAATTGCTATTGTTGTGTTTTCCCCGGGGAACAAACCTTATTCCTTTGGGCACCCAAGTATTGATGGTGTTGCGGCCAAGTTTCTTCAACAAGAGCCTAATCCAAATGATGGTGGAAGCACTAGCAACCCTAATATTGCTAAAGGTACGGACATGAACAATTGTAATCTACAACTTGCTGATGTTATGGCCAAGATTTGTGAGGAAGAAAAGAAGGGTGCGAAACTTGATAAGACTCTGAAACAACACCAAATGACAACACGCTCTAAGTGTCAAGATTTGCAAGGTTCATATAAGGAACTCAAGGCTATGGTGAGCAAGCGCCTTACTGAGTTTGAGATAGCGGATTTTATGATACAACTTTCACAAGGACTCGTGGAGGGGATGACTACAACAAAACAAATTGCAAAAAAGAAAAGAAGAATGAATTGA 555 0.418 MGRRKIEIALVNDPNTRQVTFSKRRSGLFKKANELSILCGSEIAIVVFSPGNKPYSFGHPSIDGVAAKFLQQEPNPNDGGSTSNPNIAKGTDMNNCNLQLADVMAKICEEEKKGAKLDKTLKQHQMTTRSKCQDLQGSYKELKAMVSKRLTEFEIADFMIQLSQGLVEGMTTTKQIAKKKRRMN* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1083 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja4g1083 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja4g1083 184 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja4g1083 184 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 172 - -
Lja4g1083 184 Gene3D - 14 78 IPR036879 GO:0003677|GO:0046983
Lja4g1083 184 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja4g1083 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Lja4g1083 184 PANTHER MADS BOX PROTEIN 2 172 - -
Lja4g1083 184 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Lja4g1083 184 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1083 Lja-Chr4 9492586 9493140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1083 1 86 Type I MADS-box Gene Family AT2G34440 55.814 3.79e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja4g1083 SRF-TF 1.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1083 - - gmx:100791127 201.445