Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1080 ATGGAAGTGGAATTAATTTCTACTGAAATTATCAAACCATCAACACCCACTCCTCCTCACCTTAGAATCTATCCTCTCTCTTTCATAGATAACATGATGTACCGTAATTATATCCCAGTAGCTCTATTTTACCATCCAAACGAGAGTGACAAACAATCCATAATATCAAACCTCAAGAACTCCCTCTCTGAAGTTTTAACCCGATACTACCCCTTTGCAGGCAGGCTTAGAGACCAACTTTCCATCGAGTGCAACGACGAAGGTGTGCCCTTTCGGGTCACTGAGATCAAAGGGGAGCAATCAACAATCCTACAAAACCCCAACGAAACATTGCTCAGGCTTTTGTTCCCTGATAAGTTGCCATGGAAAGTCACGGAGTACGATGAAAGCATCGCAGCTGTCCAGATCAATTTTTTCTCATGTGGTGGTCTCGCGATCACTGCGTGCGTGTGTCACAAAATGGGTGACGCTACCACCACTCTAAACTTTGTAAACGACTGGGCCGCCATGACAAAAGAAAAAGGAGAGGCGTTGACGCAATTGTCCCTCCCTTTACTCAATGGTGGAGTTTCAGTGTTCCCACACAAGGACATGCCTTGTTTCCCCGAAATAGTGTTTGGGAAAGGCAACAAGAGCAACGCGGTGTGTAGAAGGTTCGTGTTCCCACCCTCGAAAATCAACTCCCTCAAGGAAATGGTAACTTCCCATGGCGTGCAAAACCCCACGCGCGTGGAAGTTATAACCGCTTGGATCTACATGCGTGCGGTTCACGCGCTAGGGTTAACTTTTGACAAGACATCGTTCCGTCAAGTGGTCTCCCTCCGCAGGAGAATGACTCCTCCGTTGCCTAACAAGTCCGTTGGGAACATGTTTTGGTTCTTATATATGTGCACCCCGGGCGCAGACAAGGATGAGGAAATAGAGCTACATGATTTGGTAGCCAAAACAAAAGCAAATTTTGCTGATTTTTGTGAAGTGTATCCAAAGAAATTTGGAGGGGAAGATAAGGATGTGGCGTTCATCTCCAAGTGCATGAACCAAGGTCCTTCACCTTTGAACAAGCCTCGTGGTTATGATGAGATCAAGGACGTTCACAATTTGTTTATTTACACTAGTTGGTGCGGGTTCCCATTGTATAATGCGGATTTTGGGTGGGGCAAACCGCTCTGGGCAACCACTTGTGGGTGGTTCGTGAGTAATGGTATGCTTTTGACCGATACGAGAGATGGGCGAGGAGTCGAAGTGATTGTGAATATGGAAGAGGAAGACATCGTCAGGTTTGAGCGCGATGTGGAGCTTCTTCAATATGCCACTTTGAATCCAAGCCGAATTAGTAGATGCAACGATGGAAATGGAATTGATTTCAAGAGAAATCATCACACCGTCTACACCAACTCTTCCCCACCTAAGAATTTATCCCCTTTCTTTCCTAGATATAAATGTCACCAAAGATCCAAAATAAGTGAACTCAAGAAATCCTTATCTCAAGTTCTATCCAAATACTACCCCTTTGCAGGAAGTTTGAGAGATGAGCTATCCATTGAATGCAACGACCAAGGTGTGTCATTTCTAGTCACAAAAATCACAGGTACAAAGCTATCAACGATCCTCCAAAACCCCAATGAAACATTGTTGAACCCTTTGTTCCCTGATGAATTGCAGTGGGAAGCTATGAGTTCAGGTGGAAGTATCGTAGCGATCCAGATTAATTGTTTTGCATGCGGAGGAATGGCGATTAGCGTGTGTATGTGTCACAAGGTTGGTGACGCTGCCACCCTTTTCAACTTTGTAAATGATTGGGCCACCATGAACAGAGAAGAAGGAGAGTTGTTGTTACCTTCTCCTTTACTTGACGGTGGAGTTTCAGTGTTCCCACAAGACAAAATGGTAGTGTGCAGAAGGTTTGTGTTCCAAGCCTCAAAAATCAAGTCTCTCACGGCCATGATATTTTCCCAATCCAACGCTGTGCAAAATCAAAATCTCACGCGCTTTGAAGTTGTCACTGCTTGGATTTACAAGCGTGCAATTTCTGCATTGGGCTTAAATTCTAAGACGACATCGTTTCTTATACCTGTCAACCTTCGAAGAAGAATGGTTCCTCTATTGCCTGATAAGTGCGTAGGAAACATGGTTTGGTGGTATTTGGTGTTCAACCCAGTCGTGGATGAGAGGGAAATGGAACTACATGAGTTGGTAAGCAAAATAAAGGAAGGGCTATGTGAGTTTTGTGACGTGTTCCCAATGTATGAAGTAGATTTTGGGTGGGGCAAACCTATCTGGGTAACAACTAGTGAATGTCCTGCAAAGAATAGCATAATTTTGATGGATACAAGAGATGGGGATGGAATTGAAGCGATTGTGAATATGGAAGAGAAAGACATGACCTTATTTGAGCATAATGTGGAGCTCCTTCAATATGCCTCTCTTAATCCAGACCGTGGAATATACTGA 2451 0.4419 MEVELISTEIIKPSTPTPPHLRIYPLSFIDNMMYRNYIPVALFYHPNESDKQSIISNLKNSLSEVLTRYYPFAGRLRDQLSIECNDEGVPFRVTEIKGEQSTILQNPNETLLRLLFPDKLPWKVTEYDESIAAVQINFFSCGGLAITACVCHKMGDATTTLNFVNDWAAMTKEKGEALTQLSLPLLNGGVSVFPHKDMPCFPEIVFGKGNKSNAVCRRFVFPPSKINSLKEMVTSHGVQNPTRVEVITAWIYMRAVHALGLTFDKTSFRQVVSLRRRMTPPLPNKSVGNMFWFLYMCTPGADKDEEIELHDLVAKTKANFADFCEVYPKKFGGEDKDVAFISKCMNQGPSPLNKPRGYDEIKDVHNLFIYTSWCGFPLYNADFGWGKPLWATTCGWFVSNGMLLTDTRDGRGVEVIVNMEEEDIVRFERDVELLQYATLNPSRISRCNDGNGIDFKRNHHTVYTNSSPPKNLSPFFPRYKCHQRSKISELKKSLSQVLSKYYPFAGSLRDELSIECNDQGVSFLVTKITGTKLSTILQNPNETLLNPLFPDELQWEAMSSGGSIVAIQINCFACGGMAISVCMCHKVGDAATLFNFVNDWATMNREEGELLLPSPLLDGGVSVFPQDKMVVCRRFVFQASKIKSLTAMIFSQSNAVQNQNLTRFEVVTAWIYKRAISALGLNSKTTSFLIPVNLRRRMVPLLPDKCVGNMVWWYLVFNPVVDEREMELHELVSKIKEGLCEFCDVFPMYEVDFGWGKPIWVTTSECPAKNSIILMDTRDGDGIEAIVNMEEKDMTLFEHNVELLQYASLNPDRGIY* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1080 816 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 5 443 - -
Lja4g1080 816 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 479 812 - -
Lja4g1080 816 Pfam Transferase family 1 433 - -
Lja4g1080 816 Pfam Transferase family 745 803 - -
Lja4g1080 816 Pfam Transferase family 481 739 - -
Lja4g1080 816 Gene3D - 629 744 IPR023213 -
Lja4g1080 816 Gene3D - 212 438 IPR023213 -
Lja4g1080 816 Gene3D - 745 808 IPR023213 -
Lja4g1080 816 PANTHER F21J9.9 5 443 - -
Lja4g1080 816 PANTHER F21J9.9 479 812 - -
Lja4g1080 816 Gene3D - 459 628 IPR023213 -
Lja4g1080 816 Gene3D - 1 202 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1080 Lja-Chr4 9449454 9477185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1080 490 798 Monolignol Biosynthesis Gene Families AT5G48930 23.483 3.18e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1080 - - lja:Lj4g3v2512860.1 499.975