Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1069 ATGGAGTCCGATTCAGACTCCGACGGGTCTCACGTCTCTACAACTCCACCACGACAAGCAAATCCACCACCGCCACCACCACCACCACCGTCACCGCCACCAAAACCACCTCTTCTAGTCCCCAACAAACCCAAAAGAATCAGAATCAAGCCCTCAAAACCCAAACCACTCCCTCCCAAACCCCATCACAGCCCCTCAAAACCCGACCCGGAAGATCCAGAGCCAGACCCTCTCTCCCTCCCTTCCGCGCCCTTCCAAATTCGCCGTCACTCTGATTCTGTTCCGGCGTCGTCGACTTCCCACTCCATCGAAAACCTTCCCGCCGGGTTCTTCTCCAAATTCGCTTCCTTCTCGAAGATTCGAAGACCGGTTCTCAATCTAGAATCTTCTACAGACGAACCGGTTAGCAATTCAGACGCTGGGAACTCCGGGAAGCTCGAGAAGGTTGAGAAGAAGAAGCATCTTAACTTGATTGGTGCTAGCGTGCCGATGCCGACGGTGAAGCTGCGAAAGAGTGGTGGCGGTGGCGTCGGTGGCGTTGGCGAAGGGAATTTCGTGAAGCTGAACTTGTGTGGGAGAAAAAGGAAGTTTATGAAGAAGGGGTGGAAGAAGAATGGGAAATTTGGTGGTAGATGGAACAAGAGAAGTAAAGGTAAATTGGAACAAGATGGGGAGGATGATGAGGAGGAGGGTGGTTCTGGAAATGCTGCACAGCAGCAGAAGAAGCAAAGGGGGCGTTGTAAGACAAGGGAGATTGACTGCGAAGCGGTGGAAGAGGCTGTTTCCGCGGCTCGAGATGAGGTATCTGATGAGAACTTGGTGAAGTTGCTGCAATTGATTTATGGTTATGAGTGTTTTCGAGAGGGGCAGCTTGAGGCTATCAAGATGGTTCTTGCTGGGAAATCAACCATGCTTATTTTGCCGACAGGGGCGGGGAAATCGTTGTGTTATCAGTTGCCTGCGATGATTTTGCCTGGGATTACCTTGGTTGTTAGTCCATTGGTAGCATTAATCATTGATCAGCTAAAGCAATTGCCTTCTTGCATTAGGGGTGCTCTCATCAGCAGCACCCAGACTCTTGAAGAAGCCTCTGAAACTCTGGTCCAGCTTCGAGAAGGTGCGATTAAGGTGCTTTTTGTTTCACCAGAGCGGTTCCTGAACGAAGAGTTTCTGTCTACTATTTCTGCCGGGTCGGCTGTGTCACTTGTTGTTATTGACGAAGCGCATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCTCTGCTTCATAAAAGGCTTAATGTAGGTTCTGTTCTAGCAATGACAGCAACTGCTACAACCACCACTTTAGATGCCATCATCTCTGCACTAGATATTCCTCGTACCAATCTTATTCAGAAGGCACAGTTAAGGGACAATTTTCATTTATCAGTGTCGATGGTAAAAAATAGAATGAAAGACCTCCTGCTTCTGATAAAGTCTTCTCCATTTGCGGAAGTTCAAAGCATCATCATATACTGCAAATTTCAGATAGAAACTGATACAATTAGCAGATACTTGAATGATAACAATATCTTGGCAAAGAGTTATCACAGTGGTATCACTTCAAAGGAACGTAGCTATGTGCAGGAGTTGTTTAGTTCCAACAAGATCAGAGTGGTCGTTGCGACTGTGGCATTTGGAATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTGCCTGAAAGTCTTGAAGAGTATGTACAGGAAATCGGACGTGCTGGAAGAGATGGGAGGTTGTCTTATTGTCACCTATTTTATGACGATGAGACATATTTCAAACTTCGTAGTCTAATGTACAGTGAAGGAGTAGATGAGTATGCAGTGAATAAATTTCTGCGCGAAGTGTTTCCTTCTGACAAAAACTCATGTGGGAAAATCTGTTCATTAATCAAAGAATCTGCTTCACGCAGGTTTGATATGAAAGAAGAGGTGATGCTCACACTTTTGACACGCTTGGAGTTGGGCGATGTGCAGTACTTGCATGTACTTCCACCGATAAATGTAACTTGTGTTTTGAATTTTCATAAGACTCCACCACCGTTCCTTGCCAAAAAGGATTCTGCTATTGCAGTAATTATAAAAAGATCTGAAAGTAAGACAGGGCAATATGTTTTTGATATTCCAACTGTGGCAAATGACATGGGAGTTACTGCAGTTGAATTAACAAATCAGCTGTCCAACCTGAAGGTAATGGGAGAAATAACTTATGAAATGAAGGACTTGGCCTACTGTTATAGGATTGTTGAAATCCCAACAGATCTTTTTTCTCTATCAGCAGATGTTACCCAATGGTTATCTGAAGTTGAAATTTGCAAGGTACGAAAAATGGATGCAATGTTTAATGCTGCATATTTTGCTGTAAATCTATGCGACAAGATGCACGGTTGCAGTAATGCCAATCACACACCATGCTTGCAAAGGAAAATATTGGATTACTTTGCAGGAGTTGATAATACTGATTTCTGCAAGAAAATTTCTCAAAGCAGCCCTTTCCTGCGAGCAGATATAAAGGTCTTTCTACAAAGTAATTCACAGGCTCGATTTACACCAAGAGCTGTTGCGAGGATAATGCATGGAATTGCAAGCCCAGCCTATCCTTCTACAACATGGTGTAAAACCCATTTCTGGGGAAGGTATAAGAATGTAGACTTTAAGGTGGTGATGGAAGCAGCAAAGTCAGAACTGAAGAATTATGTTGGAAAAGATATGCTGTAG 2772 0.4416 MESDSDSDGSHVSTTPPRQANPPPPPPPPPSPPPKPPLLVPNKPKRIRIKPSKPKPLPPKPHHSPSKPDPEDPEPDPLSLPSAPFQIRRHSDSVPASSTSHSIENLPAGFFSKFASFSKIRRPVLNLESSTDEPVSNSDAGNSGKLEKVEKKKHLNLIGASVPMPTVKLRKSGGGGVGGVGEGNFVKLNLCGRKRKFMKKGWKKNGKFGGRWNKRSKGKLEQDGEDDEEEGGSGNAAQQQKKQRGRCKTREIDCEAVEEAVSAARDEVSDENLVKLLQLIYGYECFREGQLEAIKMVLAGKSTMLILPTGAGKSLCYQLPAMILPGITLVVSPLVALIIDQLKQLPSCIRGALISSTQTLEEASETLVQLREGAIKVLFVSPERFLNEEFLSTISAGSAVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHKRLNVGSVLAMTATATTTTLDAIISALDIPRTNLIQKAQLRDNFHLSVSMVKNRMKDLLLLIKSSPFAEVQSIIIYCKFQIETDTISRYLNDNNILAKSYHSGITSKERSYVQELFSSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLMYSEGVDEYAVNKFLREVFPSDKNSCGKICSLIKESASRRFDMKEEVMLTLLTRLELGDVQYLHVLPPINVTCVLNFHKTPPPFLAKKDSAIAVIIKRSESKTGQYVFDIPTVANDMGVTAVELTNQLSNLKVMGEITYEMKDLAYCYRIVEIPTDLFSLSADVTQWLSEVEICKVRKMDAMFNAAYFAVNLCDKMHGCSNANHTPCLQRKILDYFAGVDNTDFCKKISQSSPFLRADIKVFLQSNSQARFTPRAVARIMHGIASPAYPSTTWCKTHFWGRYKNVDFKVVMEAAKSELKNYVGKDML* 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1069 923 MobiDBLite consensus disorder prediction 1 104 - -
Lja4g1069 923 MobiDBLite consensus disorder prediction 126 148 - -
Lja4g1069 923 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 276 623 IPR004589 GO:0004386|GO:0006310
Lja4g1069 923 MobiDBLite consensus disorder prediction 126 143 - -
Lja4g1069 923 MobiDBLite consensus disorder prediction 17 41 - -
Lja4g1069 923 CDD DEXHc_RecQ4-like 274 467 - -
Lja4g1069 923 PANTHER DNA HELICASE RECQ FAMILY MEMBER 51 846 - -
Lja4g1069 923 SMART ultradead3 282 478 IPR014001 -
Lja4g1069 923 SMART helicmild6 515 596 IPR001650 -
Lja4g1069 923 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 294 464 IPR014001 -
Lja4g1069 923 MobiDBLite consensus disorder prediction 203 244 - -
Lja4g1069 923 Gene3D - 472 657 IPR027417 -
Lja4g1069 923 Pfam Helicase conserved C-terminal domain 501 595 IPR001650 -
Lja4g1069 923 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 485 635 IPR001650 -
Lja4g1069 923 PANTHER ATP-DEPENDENT DNA HELICASE Q4 51 846 - -
Lja4g1069 923 Pfam DEAD/DEAH box helicase 289 450 IPR011545 GO:0003676|GO:0005524
Lja4g1069 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 614 IPR027417 -
Lja4g1069 923 Gene3D - 256 464 IPR027417 -
Lja4g1069 923 CDD SF2_C_RecQ 472 605 - -
Lja4g1069 923 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 401 410 IPR002464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1069 Lja-Chr4 9260802 9268112 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1069 505 628 Eukaryotic Initiation Factors Gene Family AT3G19760 31.746 3.64e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1069 K10730 - gmx:100811214 1264.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1069 4 9260802 9268112 Lja4g1069 4 9260802 9268112 ECH