Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1066 ATGGCAGCTGGGAGACATGGTGGTTATCGCGATAACGAATTTCGTGACCGCGAGTCCAGTATGGATGCTCCGAGGCGCGGTGGTGGGTTAGCGAATTCGAAGGAAGACTACGATCGGGTTAGGAATGGTGGTCGCGATGATGACAGGGGCGGGAGTAGGGATTCCAGAGATAGGATTAGGGTGAGGCAGAAGGATGTTACGCAGAGAGATGCGGTTAGTAATGGCGGTTACCGGTCGTCGAGTCGGAGTAACTCTGGTGGAAGCAGTGGTGGCAGCCTTGGTCCTCGCCGGTGTGATTTCTTTGTTAAGGGAATTGATAGAGAGCCTGGTGAGCTTTCCAGTGAGAGTGGTGGGTCTGATGGTGCTGTTCAATCGGAGCCTGGGGTGAAGGACAGTGAGGTTGTCGCGGTGTCTGAGGATAACAAGACTATGACACCGCCTCCGCCGGAGAGGAAAAGGAAATTCTCCCCCATAGTGTGGGATCAGGATGATAAGGAAGCGAAGCAGTCATCTAAAGTTAGGGTTTCTGTGAAATCAGGGACTGCTGCTCTTCCTCCCCCACCGGTGCTGCCAAAAGCGTTTGTTCAATCTCCGAATGTTTCTTATGGTGGGGTTGAAATACATCCTGTCAGCAACAGAGAAGCTGAGAATGTTCTTGAGTTGCCGGCGGGAGATAAAATTAGGCAGTCCTTGTCACCAAAGCAGAATTGGGGTAATGACCAGGAGGAGGCTGAGCAGCAAGAAGGTGAAGATTATGTCCCGACTCGTCATATATCGTCTTCGAGATGGGCAGCTGGAGAAGACTCTCCTGTTGATGAGGGTGAAATCCTCAATGATGAGGAAATGCCTAAAAGGAGGAGGAGGGTGTCTCCTGAATTGTTGGAGACTAGAGTGAGGAACAAGCTGTTGAGCCCTGAGGAATCTAAACTAGAAAGTTCTGAAGGAGCTAGGGTCAAATCGTCTGGATCTGAAGAAAGAGGTAATGTCAATGGGAGAACATCCAGTGGCGATGATCATCCTGGTATTGAATCAGAGAAGGATGACTATATGGAGATTGATGCTCGAGGTATGAGAAGTGATTCCAGTGTTAGTCACTCAGATACTGAATCTGAAGATAAGGATGATAGGCAGGAGACTCCAGAACCTCCAGCTGCACCTCAAAGAACTGTCAACATGCTGCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGGCTTAATAAGATAGATGAAGGAACATATGGTGTTGTATATAGAGCTAAAGACAAGAAGACTGGGGAAATTGTAGCATTGAAGAAAGTCAAAATGGAGAAGGAAAAAGAAGGCTTCCCACTGACTTCTCTTAGGGAAATAAACATTCTGCTTTCTTTTCATCACCCATACATTGTTGATGTTAAGGAAGTAGTGGTAGGAAGTAGTCTTGATAGTATTTTCATGGTTATGGAATATATGGAACATGACCTGAAAGGATTAATGGAGTCAATGAAGCAACCATTTAGCCAGAGTGAAGTGAAGTGCTTAATGATCCAGCTTTTAGAAGGCGTGAAGTATCTTCATGACAACTGGGTGCTTCATAGGGATTTAAAGACTTCAAACCTGCTTCTAAATAATAGGGGTGAGCTAAAAATTTGTGATTTTGGGTTGGCTCGTCAATATGGGAGTCCTTTGAAACCGTATACACACCTGGTGGTTACTCTTTGGTACAGGGCACCTGAACTTCTTCTGGGGGCAAAACAGTATTCAACAGCTATTGACATGTGGTCTCTGGGTTGTATAATGGCTGAACTATTGTCCAAGGAACCACTATTCAATGGGAGAACAGAATTTGATCAACTTGACAAGATTTTTAGGATTCTTGGCACACCTAATGAATCAATTTGGCCTGGGTTCTCAAAGTTACCTGGAGTCAAGGTTAATTTTGTCAAGCACCAGTATAATCTTCTGCGTAAAAAGTTTCCTGCCACGTCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTGACTTATGACCCTGAAAAGCGAATCACAGCTGGAGATGCTCTCAATCATGAATGGTTCCGTGAAGTTCCTCTTCCCAAGAGTAAAGAATTCATGCCTACATTTCCTGCCCAACATGCCCAGGACAGGCGGATGAGGAGAATTTTGAAGAGTCCGGATCCTTTAGAGGAGCAGCGCCGAAAGGAGTTGCAACAGGGTGAATCGGGGACTGCTATTAGATTTTTGATTTCGACTTTAAATTTTCAACACTGA 2271 0.4549 MAAGRHGGYRDNEFRDRESSMDAPRRGGGLANSKEDYDRVRNGGRDDDRGGSRDSRDRIRVRQKDVTQRDAVSNGGYRSSSRSNSGGSSGGSLGPRRCDFFVKGIDREPGELSSESGGSDGAVQSEPGVKDSEVVAVSEDNKTMTPPPPERKRKFSPIVWDQDDKEAKQSSKVRVSVKSGTAALPPPPVLPKAFVQSPNVSYGGVEIHPVSNREAENVLELPAGDKIRQSLSPKQNWGNDQEEAEQQEGEDYVPTRHISSSRWAAGEDSPVDEGEILNDEEMPKRRRRVSPELLETRVRNKLLSPEESKLESSEGARVKSSGSEERGNVNGRTSSGDDHPGIESEKDDYMEIDARGMRSDSSVSHSDTESEDKDDRQETPEPPAAPQRTVNMLQGCRSVDEFERLNKIDEGTYGVVYRAKDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPYIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMESMKQPFSQSEVKCLMIQLLEGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGAKQYSTAIDMWSLGCIMAELLSKEPLFNGRTEFDQLDKIFRILGTPNESIWPGFSKLPGVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAGDALNHEWFREVPLPKSKEFMPTFPAQHAQDRRMRRILKSPDPLEEQRRKELQQGESGTAIRFLISTLNFQH* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1066 756 MobiDBLite consensus disorder prediction 222 391 - -
Lja4g1066 756 MobiDBLite consensus disorder prediction 338 381 - -
Lja4g1066 756 ProSiteProfiles Protein kinase domain profile. 402 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1066 756 SUPERFAMILY Protein kinase-like (PK-like) 394 699 IPR011009 -
Lja4g1066 756 MobiDBLite consensus disorder prediction 8 67 - -
Lja4g1066 756 MobiDBLite consensus disorder prediction 1 191 - -
Lja4g1066 756 SMART serkin_6 402 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1066 756 PANTHER CELL DIVISION PROTEIN KINASE 156 744 - -
Lja4g1066 756 Pfam Protein kinase domain 402 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1066 756 CDD STKc_CDC2L1 396 693 IPR045267 GO:0004674|GO:0005524|GO:0006468
Lja4g1066 756 MobiDBLite consensus disorder prediction 145 172 - -
Lja4g1066 756 MobiDBLite consensus disorder prediction 277 321 - -
Lja4g1066 756 PANTHER - 156 744 - -
Lja4g1066 756 MobiDBLite consensus disorder prediction 323 337 - -
Lja4g1066 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Lja4g1066 756 Gene3D Transferase(Phosphotransferase) domain 1 485 726 - -
Lja4g1066 756 MobiDBLite consensus disorder prediction 68 91 - -
Lja4g1066 756 Gene3D Phosphorylase Kinase; domain 1 386 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1066 Lja-Chr4 9241632 9245970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1066 393 744 Core Cell Cycle Gene Families AT5G10270 45.000 1.30e-95 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Lja4g1066 Pkinase 4.9e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1066 K08818 - gmx:100792524 1129.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1066 4 9241632 9245970 Lja4g1066 4 9241632 9245970 ECH