Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1060 ATGAGAATGATGGATGCAGCTGAAGTTGAAGAAAATCTGTTTGCTGCTAGTGATGCCAAGTTACATGGACAAATGTGCAAGGCTCTTTCTATAATATATTGCAAAGTGTTGTCGATATTTCCTTCCGTAGAAGCGGCGAGGCCTCGGAGTAAAACTGGAATTCAGGCACTGTGTTCGTTACACGTAGCTTTAGAGAAAGCTAAGACTGTTCTTCAACACTGCTCAGAATGCAGTAAACTTTATTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGGCTAAATGTGCGCTTGAAGATAGTCTTAGACGGGTCGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTTCAGGAGATTGTGAATGAATTTGAGTGTGTGGAATTTGCACTTGATCCATCAGAGAAGCAAGTTGGCGATGATTTGATTGCATTGCTCCAGCAGGGGAGAAAGTTTAATGACTCTAATGAAAGTAATGAGCTTGAATCTTTTCACCAGGCTGCTACAAGACTTGGAATCACATCTTCAAGAGCAGCTCTTACCGAAAGAAGGGCTCTCAAGAAACTTCTAGAAAAGGCTCGGTCTGAGGAAGACAAGCGGAAGGAATCAATTGTTGCATATCTTTTTCATCTTATGAGGAAATACTCGAAGTTATTTAGAAACGAGTTCTCAGATGACAATGATTCTCAAGGTTCTGCACCTTGTTCTCCCACTGTTCAAGGATCTATTGAGGACGGTGTTCCTGGTGGTCATGGCCAGGCTTTTGACAGACAATTTTCAAAACTTAGTTCCTTTAACTTCAAGGCAGATAATAATAGGGAATCAGGGCAGATGCCTTTTCCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTCATGTATGATCCTGTTATCATTGCTTCTGGGCAAACTTATGAAAGGGTTTGCATAGAGAAATGGTTCAGTGATGGGCATAACACGTGCCCAAAGACCCAACAAAAACTTCAACATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGTGTTCCTATTCCTGAAGGGCCTCCTGAATCTCTTGATCTTAACTACTGGAGATTAGTATTATCCGGGTCTGAATCTACAAATTCAAGATCTGTAAATAGTGTCAACTCTTACAAGTCGAAAGGTGTCAAAGTGGTTCCTCTAGAAGAGAGTGGTATCTTAGAGGAATCTGGGGGAAATGGAACTGAAATTGTGTCTGCACAAGAGGAAGATACTGAGCAGCAGTATTTTAGTTTTCTAAAAGTCTTGACTCGGGGGAACAATTGGAAGAGGAAATGTGAAGTGGTGGAACAGTTAAGGTTGTTGCTGAGGGATGATGAGGAAGCCAGGATTTTTATGGGAGCTAATGGGTTTGTTGAAGCCCTTTTGCAGTTCTTACAATCAGCTGTGCATGAAGGAAACTTGATGGCTCAGGAAATTGGAGCAATGGCTCTCTTCAACCTTGCTGTGAATAACAACGGGAATAAGGAAATGATGTTATCAGCTGGAGTATTGCCAGTGTTGGAGGAAATGATTTCTAACACTAGTTCTTATGGTTCTGCAACCGCTCTATATCTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGTACGAGTCAGGCTGTACAGTTCCTCACCCAGCTTCTTCAATCTGACTCTGATATTCAATGCAAGCAAGATTCTCTCCATGCTCTCTATAACCTTTCTACCGTGTCTACCAATATCCCATACCTCCTTTCATCCGGCATTATCAATGGCCTGCAATCCCTTCTTGTAGATCAGGGTGATTGCGTGTGGACAGAAAAATGCATAGCTGTTCTGATAAACTTAGCTACTTCTCAAGCTGGAAGGGAGGAAATGGTATCAGCTCCTGGACTCATCAGCGCATTGGCTTCCATATTGGACATTGGTGAGCTCATAGTGCAGGAGCAAGCAGCCTCTTGTCTTCTTATTTTGTGCAACAGAAGCGAGAAATGTTGCGAGATGGTCCTGCAAGAAGGGGTTATCCCTGCACTGGTGTCAATATCAGTGAATGGGACCCCAAGAGGAAGGGAGAAAGCTCAGAAACTCTTGATGCTTTTCCGGGAGCAGCGACAACGAGACCATTCGCCAGTCGAGACTCATCAGTCCCCACCTGAAACTGGTGATTTGTCTGTGCCGCCTGCTGAGATGAAACCGTTATGCAAGTCCATGTCTAGAAGAAAGACAATGAAAGGTTTTGGCTTTTTCTGGAAAACCAAGAGCTATTCTGTTTACCAGTGTTAA 2310 0.4281 MRMMDAAEVEENLFAASDAKLHGQMCKALSIIYCKVLSIFPSVEAARPRSKTGIQALCSLHVALEKAKTVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFECVEFALDPSEKQVGDDLIALLQQGRKFNDSNESNELESFHQAATRLGITSSRAALTERRALKKLLEKARSEEDKRKESIVAYLFHLMRKYSKLFRNEFSDDNDSQGSAPCSPTVQGSIEDGVPGGHGQAFDRQFSKLSSFNFKADNNRESGQMPFPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNTCPKTQQKLQHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDLNYWRLVLSGSESTNSRSVNSVNSYKSKGVKVVPLEESGILEESGGNGTEIVSAQEEDTEQQYFSFLKVLTRGNNWKRKCEVVEQLRLLLRDDEEARIFMGANGFVEALLQFLQSAVHEGNLMAQEIGAMALFNLAVNNNGNKEMMLSAGVLPVLEEMISNTSSYGSATALYLNLSCLEEAKPMIGTSQAVQFLTQLLQSDSDIQCKQDSLHALYNLSTVSTNIPYLLSSGIINGLQSLLVDQGDCVWTEKCIAVLINLATSQAGREEMVSAPGLISALASILDIGELIVQEQAASCLLILCNRSEKCCEMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRQRDHSPVETHQSPPETGDLSVPPAEMKPLCKSMSRRKTMKGFGFFWKTKSYSVYQC* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1060 769 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Lja4g1060 769 PANTHER U BOX DOMAIN-CONTAINING 4 761 - -
Lja4g1060 769 Coils Coil 178 198 - -
Lja4g1060 769 Pfam U-box domain 284 353 IPR003613 GO:0004842|GO:0016567
Lja4g1060 769 Gene3D - 430 610 IPR011989 -
Lja4g1060 769 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Lja4g1060 769 CDD RING-Ubox_PUB 287 329 IPR045210 -
Lja4g1060 769 SUPERFAMILY ARM repeat 431 709 IPR016024 -
Lja4g1060 769 Gene3D - 611 716 IPR011989 -
Lja4g1060 769 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 761 - -
Lja4g1060 769 MobiDBLite consensus disorder prediction 715 737 - -
Lja4g1060 769 SUPERFAMILY RING/U-box 275 358 - -
Lja4g1060 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 356 IPR013083 -
Lja4g1060 769 SMART arm_5 505 543 IPR000225 GO:0005515
Lja4g1060 769 SMART arm_5 544 585 IPR000225 GO:0005515
Lja4g1060 769 SMART arm_5 459 503 IPR000225 GO:0005515
Lja4g1060 769 SMART arm_5 628 669 IPR000225 GO:0005515
Lja4g1060 769 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 470 516 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1060 Lja-Chr4 9122397 9126814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1060 4 768 U-box Gene Family AT1G24330 66.324 0.0 1048
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1060 - - gmx:100794099 1269.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1060 4 9122397 9126814 Lja4g1060 4 9122397 9126814 ECH
Lja6g0960 6 21436321 21439820 Lja4g1060 4 9122397 9126814 PCT