Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja4g1054 | ATGGTGAAGTACTCACAAGAGCCTGATAATCCCACCAAGTCTTGCAAGGCCAGAGGCTCTGACCTTAGAGTTCATTTCAAGAACACTAGGGAAACAGCGCATGCCATCCGCAGGTTGCCTTTGGCAAAGGCCAAAAGGTATTTAGAGGATGTGCTTGCTCACAAACAGGCCATTCCATTCAGACGTTTCTGTCGTGGTGTTGGGAGGACAGCCCAAGCCAAGAACAGGCACTCCAATGGACAAGGACGCTGGCCTGCCAAGTCAGCTAAATTCATCCTAGACTTGCTTAAGAATGCCGAGAGCAATGCTGAAGTCAAAGGTTTGGATGTTGATGCTCTTTACATCACTCATGTCCAAGTCAATCAGGCACAGAAGCAAAGGCGCAGAACATACCGAGCCCACGGGAGAATCAACCCTTACATGTCATCTCCTTGCCACATAGAATTGATTTTGTCTGAAAAGGAAGAGCCTGTCAAGAAGGAGCCTGAGACGCAGCTTGCAGCAAGCAAGAAGTCCTAA | 519 | 0.4855 | MVKYSQEPDNPTKSCKARGSDLRVHFKNTRETAHAIRRLPLAKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYITHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLAASKKS* | 173 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja4g1054 | 172 | Hamap | 50S ribosomal protein L22 [rplV]. | 2 | 154 | IPR005721 | GO:0003735|GO:0006412|GO:0015934 | |
| Lja4g1054 | 172 | Pfam | Ribosomal protein L22p/L17e | 17 | 152 | IPR001063 | GO:0003735|GO:0005840|GO:0006412 | |
| Lja4g1054 | 172 | PANTHER | BNAA09G27910D PROTEIN | 1 | 171 | - | - | |
| Lja4g1054 | 172 | TIGRFAM | uL22_arch_euk: ribosomal protein uL22 | 4 | 154 | IPR005721 | GO:0003735|GO:0006412|GO:0015934 | |
| Lja4g1054 | 172 | MobiDBLite | consensus disorder prediction | 153 | 172 | - | - | |
| Lja4g1054 | 172 | ProSitePatterns | Ribosomal protein L22 signature. | 127 | 151 | IPR018260 | GO:0003735|GO:0005840|GO:0006412 | |
| Lja4g1054 | 172 | SUPERFAMILY | Ribosomal protein L22 | 1 | 154 | IPR036394 | GO:0003735|GO:0005840|GO:0006412 | |
| Lja4g1054 | 172 | PANTHER | 60S RIBOSOMAL PROTEIN L17 | 1 | 171 | IPR005721 | GO:0003735|GO:0006412|GO:0015934 | |
| Lja4g1054 | 172 | CDD | Ribosomal_L22 | 15 | 151 | IPR001063 | GO:0003735|GO:0005840|GO:0006412 | |
| Lja4g1054 | 172 | Gene3D | Ribosomal protein L22/L17 | 1 | 172 | IPR036394 | GO:0003735|GO:0005840|GO:0006412 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja4g1054 | Lja-Chr4 | 9064847 | 9068134 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja4g1054 | 1 | 171 | Cytoplasmic Ribosomal Protein Gene Family | AT1G27400 | 91.228 | 8.46e-120 | 334 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja4g1054 | K02880 | - | thj:104801898 | 325.865 |
Event-related genes