Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1043 ATGGAGTGGAATTCAAAATCGCCCTCGCAGTGGGACTTGGAGTACTTATCATTCTTCAATCCAAAAGCAACAGAAAATCCAAAATTACAACCAGTTAACACGAGTGCTGAAGAGAACCAAGAAATCAATGCTGGGATGTTGGACACATCTGGTGGCAGTGGTTGTTCGGGGTCTGAGCTAATACATGCTTCTTCATCAAGGAGTTCAAAATCAAATTCTATCAGCTCATCATCAAATAGGGATAGCAAAACATCTACATTCACTTTTGAAAGTTCCAGTGGTAAAAAAGAATTATCTAAAGAAGAGCCAGTTGAAACTTCTCAGGCACCAGAGCCTTCTTCTGTCTCTGGTGAACCATTGCTCACTCTGAAGCTCGGTAAGCGTTTGTACTTTGAGGATGGGTACCCAGGAAGTGATTCTAAAAACCTATCTTTCTCCGGGGCTCCTATTTCATCTTTGAACACAGGAAAGAAATGTAAATCCAATGGTCAGGACATACATTATCCATGCTGCCAGGTTGATGGCTGTGGCCTTGACCTTTCATCAGCTAAAGATTATCATCGCAAGCATAGAGTTTGTGAAAGTCATTCCAAATCCCCTAAGGTGGTCATTGCTGGTTTGGAACGTCGATTTTGTCAGCAATGTAGCAGGTTTCATGGACTGCTAGAGTTTGATGAAAAAAAGCGAAGCTGCAGACGCCGTCTTTCAGATCACAATGCTAGGCGACGTAAACCTTATCCTCAAGCTGTCCAACTAAGTCAATCAGCTTTGTCTTCACCTCACTGTGATGGGACACAACAGATGAGTCCATTTGCTTATTCAAGGACTACTACAAATGTAGCTTGGCAAAACATTCACAGAAGCAATGTCAACCATACAAAAGATCTTTTCATGAAGCCTGCAAAAGCCAGTAATGAGATACCAAATATTTTCTCCATTCTTTCTGATGATTCCAATATCTGTTTTGCATCCAAAGGCATTGCAACCAAGAACATTAATCCAGGTATAGAAGATAACATTACCTCGGAAGCAAATGCTACACAAGATTTTCACAGTGCTCTCTCTCTTCTGTCAACAAATTCATGGGGTTCATACGAGACAAAACCCTTTTCTCTAGAACAGCCCAATCACACAACCAGTAACACTCAGCCCATGATAAATGCTATGAGTCCACGCTTTCCTCCTGCGTCATCTGAATATTGGCACGCTGATCAACAAGTGAATTCCACCGCGTGGATCTCGTACTCAAATTCTGATGACAGTAACCGCTTTCATGAATTCCCACTTTTCAGAGACACATACGAGTCTGGTTTTCCTTACGACCAGTTGGGTTAA 1335 0.4195 MEWNSKSPSQWDLEYLSFFNPKATENPKLQPVNTSAEENQEINAGMLDTSGGSGCSGSELIHASSSRSSKSNSISSSSNRDSKTSTFTFESSSGKKELSKEEPVETSQAPEPSSVSGEPLLTLKLGKRLYFEDGYPGSDSKNLSFSGAPISSLNTGKKCKSNGQDIHYPCCQVDGCGLDLSSAKDYHRKHRVCESHSKSPKVVIAGLERRFCQQCSRFHGLLEFDEKKRSCRRRLSDHNARRRKPYPQAVQLSQSALSSPHCDGTQQMSPFAYSRTTTNVAWQNIHRSNVNHTKDLFMKPAKASNEIPNIFSILSDDSNICFASKGIATKNINPGIEDNITSEANATQDFHSALSLLSTNSWGSYETKPFSLEQPNHTTSNTQPMINAMSPRFPPASSEYWHADQQVNSTAWISYSNSDDSNRFHEFPLFRDTYESGFPYDQLG* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1043 444 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 20 442 - -
Lja4g1043 444 SUPERFAMILY SBT domain 169 250 IPR036893 GO:0003677|GO:0005634
Lja4g1043 444 Pfam SBP domain 171 244 IPR004333 GO:0003677
Lja4g1043 444 MobiDBLite consensus disorder prediction 23 118 - -
Lja4g1043 444 MobiDBLite consensus disorder prediction 23 93 - -
Lja4g1043 444 Gene3D - 162 232 IPR036893 GO:0003677|GO:0005634
Lja4g1043 444 ProSiteProfiles Zinc finger SBP-type profile. 168 245 IPR004333 GO:0003677
Lja4g1043 444 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 442 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1043 Lja-Chr4 8917209 8920835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1043 1 404 SBP-box Gene Family AT5G43270 39.036 1.02e-67 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lja4g1043 SBP 2.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1043 - - lja:Lj0g3v0057709.3 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1043 4 8917209 8920835 Lja4g1043 4 8917209 8920835 ECH