Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1038 ATGAGCTTGCTCTATGTAGTAGGGTTTGGTCTAAAGTTGGGGCATCTAGTTTTAGTGCTATGTTGCTGGGTTGTGTCTGTTGTTTACCTCAACAGGTTATTCTGCAGTGAAATTAAGGGTACTAGGGTGGGTTTTCAGGGTGGTTTTGGCAAGATGGGGCTGAAATGGTGGGAGAAGATCTCAGGGAGTGGTTCCAGAACTTATCAACATTGCTACCAGTATATTGGGTCCAAGGGAGTGAAGAGACAAATGTGGTGGAACCTTTATAGGGCGTGGATTGTGTTTTGGATCGGAGTATCTGTGTTTATCTACTTCTACATGTCCTTTCAAGATGCTGAGAAGAGGAAAGAGACTCTGGCAAGCATGTGTGATGAAAGGGCTAGGATGCTGCAGGATCAGTTTAATGTGAGTATGAATCATATCCAAGCCATGTCGATTCTGATCTCAACTTTCCATCACTCCAAGAACCCCTCAACCATTGATCAGAGAACTTTTGCCAGGTACACGGATAGAACAGCTTTTGAGAGGCCCCTTACAAGTGGTGTAGCATATGCTGTAAGGGTGCTCCAATCCGAAAGGGAACAATTTGAAAAGCAACAAGGCTGGACTATTAAGAGGATGGACACTGTGGAGCAGAACCCAGTTCATAAGGATGATTATGCCCCAGAAAAATTGGAGCCATCCCCCATTCAGGAAGAATATGCTCCTGTCATATTTGCACAAGATACGGTTTCACATGTCATTTCTGTTGACGTGCTTTCTGGAAAGGAAGACCGTGGGAATGTGTTGCGTGCAAGAGAATCAGGGAAAGCTGTTCTAACTGCGCCCTTCAGGCTGCTCAAAACAAATCGTCTAGGGGTTATCCTGACATTTGCTGTCTACAAGAAAGATCTTCCATCAAATGCTACCCCAAATGAAAGAATTCAAGCAACTGATGGGTATCTTGGTGGGGTCTTTCATGTTGAGTCGTTAGTGGATAAATTACTTCAGCAACTTGCTAGCAAGCAAACTGTAAATGCTGATGTGTATGATACTACAAATCATACTCATCCAATCGCCATGTACGGCTCAAATGTATCCAGGGATGCGTTCTATCATGTCAGCAGTCTTAACTTTGGAGACCCCTTCAGAAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCGCCATGGCCATTGTTGGCAATAGCTGCTTCAATTGGTGCCTTTCTTATTCCACTCCTTATTGGACAAATTTCCTATGCTACTGTGATTCAAATTGCAAAAGTAGAAGAAGATTACCGTCAGATGATGGAGCTAAAAGAACGAGCTGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTTGCTACTGTTTCCCACGAGATCAGAACACCAATGAATGGTGTTTTAGGGATGTTGCATATGCTTATGGACACAGATCTAGATGTAACCCAACAGGAATATGTCAGAACAGCGCAGGACAGCGGAAAATCACTGGTATCACTTATAAATGAGGTTTTGGACCAGGCAAAAATTGAATTTGGTAAGCTAGAGCTTGAGGCTGTGCTCTTTGATGTACGGGCAATTCTGGATGATGTGTTGTCACTATTTTCTGAGAAGTCTCAAGCAAAAGGATTAGAGTTGGCAGTTTTTGTGTCAGATCAGGTTCCTGAACTGCTAATAGGTGATCCAGGAAGGTTTCGACAAATAATTACAAACCTCATGGGTAACTCAATTAAGTTCACGGACAAAGGACATGTTTTTGTCACTATCCATCTTGTTGAGGAGGTTGTCCATTCAGTAGAGGTTGACAAAGAACCAAATTCTGATAAAAATACCTTGAGTGGTTTCCCAGTGGCTGATATCCGCAAGAGCTGGGAAGGATTCAAGGCTTTCAGTCAGGAGGGACCTCTTGGTTCTTTCTCATCCTCCTCGAGCGATTTCATCAATTTGATTGTATCTGTGGAGGACACAGGAGAAGGTATTCCTCTAGAAGCCCAGTCCCGCATCTTCACTCCATTCATGCAGGTAAATCCATCCATCTCTAGAAAACATGGGGGAACTGGTATTGGCCTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGTGAAATTGGATTTGTAAGCACACCCAAGATTGGATCCACTTTCACTTTTACCGCGGTCTTCACCAATGGACTCCCGAGTTCAAATGAGTGTAAAATTCAGCAAATCAGCAACCAGCCTCAACCAGCATCTTCAGCATTTGAGGGGATGACTGCATTGGTTATTGACCCGAGAACCGTTCGCGCAAAAGTGTCTAGATATCACATCCAACGGCTTGGCATTCATGTTGAAATCGTTTCAGATTTAAACCAAGGGTTGTCAACCATAGGCAATGGGAGCATAGTTACCAATATGGTCCTGATTGAGGAGGCGGTCTGGGACAGAGATTCAGGCATGTCATCTCACTTTGTCAAGAACACAAGGAAAGTTGATAATGGGGTTCCTCCAAAGCTGTTTATTCTTGTTAATTCTAGTAATTCTTCTAAAGCAAGTAGTGTAGCCTCTGATGTTCATTATCCTACTGTCATCACAAAACCTCTCAGAGCAAGCATGCTTGCTGTCACGCTACAACGAGCCATGGGTGTTAGGAACAAGAGTACTCCTCCAAATAGGGAACTCCAAAGTTTGTCTCTTCGCCAACTTCTTCTCGGGAGGAAGATTCTAATCGTAGACGACAATAGTGTGAACCGTGCAGTAGCAGCCGGTGCTTTGAAGAAGTATGGAGCAGCTGTGGTTTGTGTTAGCAGTGGGCAAGATGCCATCTCTTCACTGACGCCACCCCATCAGTTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACAAGGAGAATTAGAGAGATGGAACACAATGTGAACAGAGAAGTGTCTATGGATGGCTTTGAGAATGTTTCGAACTGGCATGTGCCCATTTTAGCTATGACTGCAGATGTGATCCAGGCTACACATGAGGAATGCCTAAGATATGGCATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTTTATAGAGAAGTTTCTAGATTTTTCCCTTCATCTTGA 3093 0.4365 MSLLYVVGFGLKLGHLVLVLCCWVVSVVYLNRLFCSEIKGTRVGFQGGFGKMGLKWWEKISGSGSRTYQHCYQYIGSKGVKRQMWWNLYRAWIVFWIGVSVFIYFYMSFQDAEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHSKNPSTIDQRTFARYTDRTAFERPLTSGVAYAVRVLQSEREQFEKQQGWTIKRMDTVEQNPVHKDDYAPEKLEPSPIQEEYAPVIFAQDTVSHVISVDVLSGKEDRGNVLRARESGKAVLTAPFRLLKTNRLGVILTFAVYKKDLPSNATPNERIQATDGYLGGVFHVESLVDKLLQQLASKQTVNADVYDTTNHTHPIAMYGSNVSRDAFYHVSSLNFGDPFRKHEMHCRFKQKPPWPLLAIAASIGAFLIPLLIGQISYATVIQIAKVEEDYRQMMELKERAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQDSGKSLVSLINEVLDQAKIEFGKLELEAVLFDVRAILDDVLSLFSEKSQAKGLELAVFVSDQVPELLIGDPGRFRQIITNLMGNSIKFTDKGHVFVTIHLVEEVVHSVEVDKEPNSDKNTLSGFPVADIRKSWEGFKAFSQEGPLGSFSSSSSDFINLIVSVEDTGEGIPLEAQSRIFTPFMQVNPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSTPKIGSTFTFTAVFTNGLPSSNECKIQQISNQPQPASSAFEGMTALVIDPRTVRAKVSRYHIQRLGIHVEIVSDLNQGLSTIGNGSIVTNMVLIEEAVWDRDSGMSSHFVKNTRKVDNGVPPKLFILVNSSNSSKASSVASDVHYPTVITKPLRASMLAVTLQRAMGVRNKSTPPNRELQSLSLRQLLLGRKILIVDDNSVNRAVAAGALKKYGAAVVCVSSGQDAISSLTPPHQFDACFMDIQMPEMDGFEATRRIREMEHNVNREVSMDGFENVSNWHVPILAMTADVIQATHEECLRYGMDGYVSKPFEAEQLYREVSRFFPSS* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1038 1030 Gene3D - 891 1029 - -
Lja4g1038 1030 ProSiteProfiles Histidine kinase domain profile. 450 719 IPR005467 -
Lja4g1038 1030 PANTHER TWO-COMPONENT HISTIDINE KINASE 57 1028 - -
Lja4g1038 1030 PANTHER HISTIDINE KINASE 3 57 1028 - -
Lja4g1038 1030 Gene3D CHASE domain 160 389 IPR042240 -
Lja4g1038 1030 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 717 IPR003594 -
Lja4g1038 1030 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 429 509 IPR036097 GO:0000155|GO:0007165
Lja4g1038 1030 SUPERFAMILY CheY-like 743 871 IPR011006 -
Lja4g1038 1030 CDD REC_hyHK_CKI1_RcsC-like 896 1023 - -
Lja4g1038 1030 SMART REC_2 894 1023 IPR001789 GO:0000160
Lja4g1038 1030 Coils Coil 420 440 - -
Lja4g1038 1030 CDD HATPase_EvgS-ArcB-TorS-like 560 717 - -
Lja4g1038 1030 Gene3D - 413 506 - -
Lja4g1038 1030 Pfam CHASE domain 159 355 IPR006189 -
Lja4g1038 1030 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 497 714 IPR036890 -
Lja4g1038 1030 Gene3D - 107 159 - -
Lja4g1038 1030 ProSiteProfiles Response regulatory domain profile. 895 1027 IPR001789 GO:0000160
Lja4g1038 1030 CDD HisKA 443 504 IPR003661 GO:0000155|GO:0007165
Lja4g1038 1030 CDD PRTases_typeI 849 923 IPR000836 -
Lja4g1038 1030 ProSiteProfiles CHASE domain profile. 156 382 IPR006189 -
Lja4g1038 1030 SUPERFAMILY CheY-like 893 1026 IPR011006 -
Lja4g1038 1030 SMART HKATPase_4 555 719 IPR003594 -
Lja4g1038 1030 Pfam His Kinase A (phospho-acceptor) domain 443 506 IPR003661 GO:0000155|GO:0007165
Lja4g1038 1030 SMART HisKA_10 443 508 IPR003661 GO:0000155|GO:0007165
Lja4g1038 1030 PRINTS Bacterial sensor protein C-terminal signature 703 716 IPR004358 GO:0016310|GO:0016772
Lja4g1038 1030 PRINTS Bacterial sensor protein C-terminal signature 644 658 IPR004358 GO:0016310|GO:0016772
Lja4g1038 1030 PRINTS Bacterial sensor protein C-terminal signature 679 697 IPR004358 GO:0016310|GO:0016772
Lja4g1038 1030 PRINTS Bacterial sensor protein C-terminal signature 662 672 IPR004358 GO:0016310|GO:0016772
Lja4g1038 1030 Gene3D - 507 719 IPR036890 -
Lja4g1038 1030 SMART CHASE_2 156 357 IPR006189 -
Lja4g1038 1030 Pfam Response regulator receiver domain 896 1022 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1038 Lja-Chr4 8846559 8854720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1038 1 1029 Miscellaneous Gene Families AT1G27320 66.029 0.0 1358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja4g1038 CHASE 1.9e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1038 K14489 - gmx:100801546 1641.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1038 4 8846559 8854720 Lja4g1038 4 8846559 8854720 ECH