Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1037 ATGGATCCAGACGCGTTGGCAAAGGCATTTGTGGAGCACTACTACAGCACCTTCGACGGCAACCGTGCCGGACTGGCGAATCTCTACCAGGAAGGTTCCATGCTGACCTTCGAGGGTCAGAAGATCCAAGGCTCCACCAACATCGTCGCCAAGCTCACCTCCCTTCCCTTCCAGCAGTGCCTCCACTCCATCTCCACCGTTGACTGCCAGCCCTCCGGCGTCAACAACGGCATGCTCGTCTTCGTCAGCGGTAATCTCCAACTCGCCGGCGAGCAGCACGCCCTCAAGTTCAGCCAGATGTTCCATTTGATACCAACACCGCAAGGAAGCTATTACGTATTGAATGATGTCTTCCGTCTGAATTATGCTTGA 372 0.5511 MDPDALAKAFVEHYYSTFDGNRAGLANLYQEGSMLTFEGQKIQGSTNIVAKLTSLPFQQCLHSISTVDCQPSGVNNGMLVFVSGNLQLAGEQHALKFSQMFHLIPTPQGSYYVLNDVFRLNYA* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1037 123 SUPERFAMILY NTF2-like 3 121 IPR032710 -
Lja4g1037 123 Pfam Nuclear transport factor 2 (NTF2) domain 7 120 IPR002075 -
Lja4g1037 123 PANTHER NUCLEAR TRANSPORT FACTOR 2-LIKE 1 123 - -
Lja4g1037 123 PANTHER NUCLEAR TRANSPORT FACTOR 2 1 123 IPR045875 GO:0006913
Lja4g1037 123 CDD NTF2 2 122 IPR018222 -
Lja4g1037 123 ProSiteProfiles Nuclear transport factor 2 domain profile. 6 120 IPR018222 -
Lja4g1037 123 Gene3D - 1 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1037 Lja-Chr4 8843203 8845600 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1037 6 85 MAP Kinase Kinase Gene Family AT5G40440 31.250 1.66e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1037 - - gmx:100777334 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1037 4 8843203 8845600 Lja4g1037 4 8843203 8845600 ECH
Lja6g0966 6 21485631 21487852 Lja4g1037 4 8843203 8845600 PCT