Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1036 ATGACACCTGGTGCAGGTCACGAATATGATATTAATGATCTGTATCAAGAAGCTCAAAGGAGATGGCTGAAGCCTGCAGAGGTGATGTGCATTTTACAGAATCATGAAAAGTACCAGTTCTCTCAAGAGCCTCCGCAAAAGCCATCCAGTGGATCACTGTTTCTGTTTAACAGAAGAGTCCTGCGTTTCTTCCGCAGAGATGGTCATGCCTGGCGGAAGAAAAGAGATGGAAGAGCTGTGGGAGAAGCACACGAACGGCTGAAGGTTGGAAATGTTGAAGCCTTAAATTGTTACTATGCACATGGAGAACAGAACCCTACTTTCCAGAGGCGGAGCTATTGGATGTTGGATCCGGCATATGATCACATTGTTCTTGTGCATTACAGAGAAACTAGTGAGGGAAGTCCCAGTTCTACACCTGGTACTCAATTGTCACCAGGTTCCTCCTCTGCGCTTAGTCAGAGTCCTAGCTCATATTCTTCTCAGAACCCAGTGTCAACATCCATTCTTGATGATTCATATGAACCTAATCAGAGTTCCTTCAGTCCTGGATCTGCAGAAGTTACCTCTGATATATTCGTTGTTAACAATGAAGTGGGTCACTTGGATGGAACAGATACAGAATCAGGAACCTCAACTGATCTTCAGATTACTTTGCGCCGACTAGAGCAGCAGTTAAGTTTGAATGATGACAAATTTGAAGAAATTTCTTCCTTCGGCAATCAGCATGAAACTGCAGATGATTCAAGCCCTCAGCACCATCAAGAGAAATCTGCAAATTTGTCTGGACCAGATGGCCAGGGGCTATTTTACAATGGATATAATGGAAGGCAAGGTGATATTGGTGAATGTCATCATGAACTACCAGACCGCGGTTACCCTGATGGAAATGAAAAGGCTTTATCTTGCACAGATATGCTGGAAACATGCAGGTCCTCATCTGAAGCCAGGTTACCACAGAAAAATGTATACATACCATCAAGACATCATGAAAGTTCAACATCGTCCAGAAGCGAACCAGTTGTCTACCAGGAAAACTATCGCTGGCTGAACTTCAACAATGACAGTGCTCAAAACTCTGCTTTCTCATCGACACAAGGCGTAGGTGGAGTCAAGCTTCCTCCATATTCTTCTTTCGTAGAAGCACAAGAAACAAATTCTGACTACTATGCAGGATTGTTTGACCAAAGCCTAATAGGAGAACCTCTGGATGCAGGTTCAAGCTTAACTCTTGCCCAAAAACAGAAATTTTCTATTAAGGCAGTCTCCCCAGAATGGGGTTTTGCCTCTGAGACTACAAAGGTCTTCATTATTGGGTCTTTTCTCTGTCCACCCTCGGTTTCTACCTGGTCCTGTATGTTTGGTGATATTGAAGTTCCTGTTGAGATCATTCAGGACGGTGTAATCTGTTGCGAAGCTCCATCTCACCTCACTGGAAAGGTTACTCTGTGCGTTACTTCCGGAAACCGGGAGTCCTGCAGTGAAGTCAGAGAGTTCGAGTATCGTAACACGACCAATAGTTTCACCCACTATACTCCATTGAAAACAGAAGCTGCAAGAAGTCCAGAAGAACTGTTATTACTAGTTAGATTGGGGCAGATGCTCCTTTCTGCTTCACCTGTAAAGAATGATAATATAGAATCTGGAGTTCCTCTCATGAAACAGAAAGCTGATGATGATTCATGGAGCCATATTATAGAGGCTCTTCTAGTCGGCAGTGGAACTTCATCCGGCACTATCGATTGGCTTCTCGAAGAGTTTCTAAAGGATAAGCTGCAACTGTGGCTTTCTTGCAAATCCCAGGAAGTAGATGAAGAGACAGGCTGTTGTTTGTCCAAGAAAGAGCAGGGGATTATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAGCCCTATTCTCAGTTCCTGTGTGAATATCAATTTCCGTGACATCAATGGGTGGACTGCGCTTCATTGGGCTGCACGTTTCGGAAGGGAAAAAATGGTTGCTTTGCTTATAGCTTCTGGCGCATCTGCTGGAGCAGTGACAGATCCAAGTGCACAAGATCCAACCGGCAAAACTGCTGCATCAATTGCATCCAGCCATGGGCATAAGGGTCTGGCAGGGTATCTTTCAGAGGTGGCTCTAACAAGCCATCTGCAATCGCTTACAATGGAAGAGAGTGAACTGTCTAAAAGTTCGGCTGAGCTTCAAGCCGATTTAACCGTTAGTAGTGTCTCCAACGAAAATATCACCGCCACTGAGGATCAGACTTCACTGAAAGATACCTTGGCTGCTATCAGAAATGCAGCTCAGGCAGCTGCGCGGATACAATCTGCTTTTCGCTCGCATTCTTTCAGAAAACGGAGAGCAAGAGAAGCAGCTCCAGGTATGGATGGATATGGTATCGACGCAGATAGCATTGGTAACATGCCAGAGCTTTCTGCTTTGTCAAAACTTGCCTTTCGGAACTCGCGTGAACATAATTTAGCTGCCTTATCAATTCAGAAGAAGTATCGGGGTTGGAAAGGTCGCAAGGATTTCTTAACACTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTTCTATGGGCAGTTGGAATCTTGGACAAGGTTGTGCTACGTTGGCGGCGAAAAGGGGTTGGTTTAAGAGGCTTCCGACAAGAGATGGAGACTAATGAAAATGAAGATGAAGATGAAGATGAAGATATTCTTAAGATTTTCAGGAAACAGAAAGTAGATGTAGAAATTGAAGAGGCTGTTTCACGGGTTCTGTCCATGGTTGACTCTCCAGATGCTCGTCAGCAATACCATCGCATGCTTGAGAAGTATCGCCAAGCCAAGGCTGAACTTGCGGGTACTAGTGAAGAAACATCATTATCAACTTCTTTAGGGGATGTGTACAATATGGAAGATGATTTTTATCAATTTCCATAG 2955 0.445 MTPGAGHEYDINDLYQEAQRRWLKPAEVMCILQNHEKYQFSQEPPQKPSSGSLFLFNRRVLRFFRRDGHAWRKKRDGRAVGEAHERLKVGNVEALNCYYAHGEQNPTFQRRSYWMLDPAYDHIVLVHYRETSEGSPSSTPGTQLSPGSSSALSQSPSSYSSQNPVSTSILDDSYEPNQSSFSPGSAEVTSDIFVVNNEVGHLDGTDTESGTSTDLQITLRRLEQQLSLNDDKFEEISSFGNQHETADDSSPQHHQEKSANLSGPDGQGLFYNGYNGRQGDIGECHHELPDRGYPDGNEKALSCTDMLETCRSSSEARLPQKNVYIPSRHHESSTSSRSEPVVYQENYRWLNFNNDSAQNSAFSSTQGVGGVKLPPYSSFVEAQETNSDYYAGLFDQSLIGEPLDAGSSLTLAQKQKFSIKAVSPEWGFASETTKVFIIGSFLCPPSVSTWSCMFGDIEVPVEIIQDGVICCEAPSHLTGKVTLCVTSGNRESCSEVREFEYRNTTNSFTHYTPLKTEAARSPEELLLLVRLGQMLLSASPVKNDNIESGVPLMKQKADDDSWSHIIEALLVGSGTSSGTIDWLLEEFLKDKLQLWLSCKSQEVDEETGCCLSKKEQGIIHMVAGLGFEWALSPILSSCVNINFRDINGWTALHWAARFGREKMVALLIASGASAGAVTDPSAQDPTGKTAASIASSHGHKGLAGYLSEVALTSHLQSLTMEESELSKSSAELQADLTVSSVSNENITATEDQTSLKDTLAAIRNAAQAAARIQSAFRSHSFRKRRAREAAPGMDGYGIDADSIGNMPELSALSKLAFRNSREHNLAALSIQKKYRGWKGRKDFLTLRQKVVKIQAHVRGYQVRKHYKVLWAVGILDKVVLRWRRKGVGLRGFRQEMETNENEDEDEDEDILKIFRKQKVDVEIEEAVSRVLSMVDSPDARQQYHRMLEKYRQAKAELAGTSEETSLSTSLGDVYNMEDDFYQFP* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1036 984 Pfam IPT/TIG domain 419 501 IPR002909 -
Lja4g1036 984 ProSiteProfiles CG-1 DNA-binding domain profile. 11 137 IPR005559 GO:0003677
Lja4g1036 984 Pfam IQ calmodulin-binding motif 848 867 IPR000048 GO:0005515
Lja4g1036 984 Pfam IQ calmodulin-binding motif 826 843 IPR000048 GO:0005515
Lja4g1036 984 Gene3D Immunoglobulins 412 507 IPR013783 -
Lja4g1036 984 ProSiteProfiles IQ motif profile. 823 852 IPR000048 GO:0005515
Lja4g1036 984 Pfam Ankyrin repeats (3 copies) 638 707 IPR002110 GO:0005515
Lja4g1036 984 SUPERFAMILY Ankyrin repeat 616 708 IPR036770 -
Lja4g1036 984 ProSiteProfiles IQ motif profile. 765 794 IPR000048 GO:0005515
Lja4g1036 984 MobiDBLite consensus disorder prediction 131 186 - -
Lja4g1036 984 MobiDBLite consensus disorder prediction 240 270 - -
Lja4g1036 984 SMART iq_5 764 786 IPR000048 GO:0005515
Lja4g1036 984 SMART iq_5 845 867 IPR000048 GO:0005515
Lja4g1036 984 SMART iq_5 822 844 IPR000048 GO:0005515
Lja4g1036 984 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 7 976 - -
Lja4g1036 984 Coils Coil 943 963 - -
Lja4g1036 984 Pfam CG-1 domain 17 130 IPR005559 GO:0003677
Lja4g1036 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 814 870 IPR027417 -
Lja4g1036 984 Gene3D - 584 717 IPR036770 -
Lja4g1036 984 SMART ANK_2a 647 676 IPR002110 GO:0005515
Lja4g1036 984 SMART ANK_2a 686 715 IPR002110 GO:0005515
Lja4g1036 984 ProSiteProfiles Ankyrin repeat profile. 647 679 IPR002110 GO:0005515
Lja4g1036 984 ProSiteProfiles IQ motif profile. 846 871 IPR000048 GO:0005515
Lja4g1036 984 SMART CG_1_2 14 132 IPR005559 GO:0003677
Lja4g1036 984 Gene3D - 823 871 - -
Lja4g1036 984 CDD IPT 418 502 - -
Lja4g1036 984 ProSiteProfiles Ankyrin repeat region circular profile. 647 673 - -
Lja4g1036 984 SUPERFAMILY E set domains 419 502 IPR014756 -
Lja4g1036 984 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 7 976 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1036 Lja-Chr4 8834026 8842669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1036 8 984 CAMTA Transcription Factor Family AT1G67310 51.801 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lja4g1036 CG-1 5.7e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1036 K21596 - gmx:100786880 1436.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1036 4 8834026 8842669 Lja4g1036 4 8834026 8842669 ECH
Lja6g0968 6 21495040 21515226 Lja4g1036 4 8834026 8842669 PCT