Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1032 ATGGGGAGAGGAAGAGTGGAGCTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTCGCTAAACGCAGGAACGGACTATTGAAGAAAGCTTATGAACTTTCCGTTCTTTGCGATGCGGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGCATGCTGAAAACGCTAGAAAGGTACCAGAAATGTAACTATGGTGCGCCGGAAGCTAATGTGTCTACACGGGAAGCCTTGGAGTTAAGCAGCCAACAGGAATACTTGAAGCTGAAAGCACGTTATGAAGCCCTACAACGCTCCCAGAGGAACCTTATGGGGGAAGATCTAGGCCCTCTAAACAGCAAAGAGCTGGAGTCACTTGAGAGGCAGCTAGATTCATCCTTGAAGCAAATAAGATCTACAAGGACCCAATTCATGCTGGATCAGCTCTCTGATCTTCAACGTAAGGAACACATGCTAAGCGAGGCTAACAGGTCTCTCAGACAAAGGCTGGAAGGGTACCAACTAAACTCACTGCAACTGAATCCCGGTGTTGAAGACATGGGATATGGCCGCCATCCAGCTCAAACTCATGGTGATGCCTTCTATCATCCAATAGAATGTGAGCCGACCTTACAAATTGGTTACCAGCCTGATCCAGTGTCAGTGGTGACGGCAGGCCCGAGCATGAATAATAATTACATGGCAGGATGGCTGCCATAG 729 0.4746 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEANVSTREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLNSKELESLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRLEGYQLNSLQLNPGVEDMGYGRHPAQTHGDAFYHPIECEPTLQIGYQPDPVSVVTAGPSMNNNYMAGWLP* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1032 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja4g1032 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja4g1032 242 Coils Coil 126 146 - -
Lja4g1032 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Lja4g1032 242 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja4g1032 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 228 - -
Lja4g1032 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lja4g1032 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja4g1032 242 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Lja4g1032 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Lja4g1032 242 Coils Coil 152 172 - -
Lja4g1032 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja4g1032 242 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja4g1032 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja4g1032 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja4g1032 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1032 Lja-Chr4 8816449 8822384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1032 1 242 MADS-box Gene Family AT1G24260 74.494 2.20e-117 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja4g1032 K-box 3.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1032 - - gmx:100805078 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1032 4 8816449 8822384 Lja4g1032 4 8816449 8822384 ECH