Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1019 ATGGATGATGATTTCGAGTTCCCAGCTGCCGGCAACATGGGAATGGAGGTGGAGGAGGATGAGGTGGTAAGCCCGGTGCTCAAGGTTGGTGAAGAGAAGGAGATTGGTAAGGGCGGGTTGAAGAAGAAGCTTGTTAAAGAAGGTCAAGGTTGGGACAATCCTAACGCTGGTGATCAAGTTGAAGTGCATTATACTGGAACCTTGCTCGATGGTACCAAATTTGATTCTAGCCGTGACAGGGGTACACCTTTCAAATTCAAGCTTGGCCAAGGGCAAGTGATCAAGGGATGGGATGAAGGTATCAAGACCATGAAGAAGGGTGAGAATGCTATTTTCACCATACCCCCAGAATTGGCTTATGGAGAGTCCGGATCTCCACCCACCATTCCACCAAATGCAACTCTTCAGTTTGATGTGGAGTTGCTGTCTTGGACAAGTGTGAAGGACATTACCAAGGATGGAGGAATCTTGAAGAACATTGTTACTGAAGGGGAGAAATGGGATAATCCTAAGGATTTGGATGAAGTGTTTGTTAAGTATGAAGCTCGGCTTGAAGATGGGACAGTCATTTCTAAATCTGATGGAGTGCAATTCACTGTGGAAAAGGGATTTTTGTGCCCTGCTTTGGCCAAGGCTGTGAAAACAATGAAGAAGGGAGAAAAAGTTCTCTTGAATGTGAAGCCACAATATGCATTTGGTGAGAGTGGAAGGCCAGCATCTGGAAATGAAGGAGGTGTGCCTCCAAATGCTTCGCTCCAAGTAGATCTTGAGTTAGTCTCATGGAAGGCCGTGTCTGACATTACCAAAGACAGGAAGGTTCTTAAGAAGACTTTGAAGGAAGGAGAGGGATATGAACGACCAAATGATGGAGCTGTAGTTCAAGTGAAACTTGTTGGCAAGCTGCAAGATGGGACTGTTTTCCTTAAGAGGGGCTATGATGATGAACAGCCATTTGAGTTCAAAATTGATGAAGAGCAAGTAATTGATGGACTTGATAGAGCTGTGAAGAACATGAAGAAAGGTGAAATTGCATTGGTGATCATTCAGCCTGAGTATGCTTTTGGTCCATCTGGGTCATCTCAGGAATTGGCTGCTGTTCCTCCCAATTCCACTGTGTATTATGAAGTTGAGCTGGTTTCTTTTGTGAAGGAAAAAGAATCCTGGGATCTGAAAACTCCAGAGAAGATTGAAGCAGCTGGGAAGAAAAAGGAAGAGGGGAATGCACTGTTCAAGGCTGGTAAATATGAAAGAGCATCAAAGAGATATGAGAAGGCTATGAAATTTGTTGAGTATGATACGTCCTTCAGTGACGAGGAGAAACAGCAGTCTAAGACATTGAAGATTACATGCAATCTCAATGATGCAGCCTGCAAGCTGAAACTCAAGGACTACAAACAGGCAGAGAAGTTGTGCACAAAGGTATTGGAGCTTGATAGTAGGAATGTGAAGGCACTGTACCGGAGGGCACAGGCATATATTCATCTCGTGGACTTGGATCTGGCTGAGATGGATATCAAGAAAGCCCTTGAGATTGAGCCAGATAACAGGGATGTGAAGATTGAGTACAAAATTTTGAAGGAGAAAGTCAGAGAATACAACAAGAAGGATGCACAGTTCTATGGCAGTATTTTTGCGAAAATGAACAAGGTAGAGCAAGCAAGAACTGCAGGAGCAAAGCAGGAACCAGTGCCAATGGTTGTTGATAGTAAAGCCTAA 1716 0.4406 MDDDFEFPAAGNMGMEVEEDEVVSPVLKVGEEKEIGKGGLKKKLVKEGQGWDNPNAGDQVEVHYTGTLLDGTKFDSSRDRGTPFKFKLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDITKDGGILKNIVTEGEKWDNPKDLDEVFVKYEARLEDGTVISKSDGVQFTVEKGFLCPALAKAVKTMKKGEKVLLNVKPQYAFGESGRPASGNEGGVPPNASLQVDLELVSWKAVSDITKDRKVLKKTLKEGEGYERPNDGAVVQVKLVGKLQDGTVFLKRGYDDEQPFEFKIDEEQVIDGLDRAVKNMKKGEIALVIIQPEYAFGPSGSSQELAAVPPNSTVYYEVELVSFVKEKESWDLKTPEKIEAAGKKKEEGNALFKAGKYERASKRYEKAMKFVEYDTSFSDEEKQQSKTLKITCNLNDAACKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIHLVDLDLAEMDIKKALEIEPDNRDVKIEYKILKEKVREYNKKDAQFYGSIFAKMNKVEQARTAGAKQEPVPMVVDSKA* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1019 571 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 290 382 IPR001179 GO:0003755
Lja4g1019 571 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 173 262 IPR001179 GO:0003755
Lja4g1019 571 Gene3D - 148 262 IPR046357 GO:0003755
Lja4g1019 571 Gene3D - 29 147 IPR046357 GO:0003755
Lja4g1019 571 PANTHER PEPTIDYLPROLYL ISOMERASE 272 381 - -
Lja4g1019 571 SUPERFAMILY TPR-like 395 547 IPR011990 GO:0005515
Lja4g1019 571 SUPERFAMILY FKBP-like 17 149 - -
Lja4g1019 571 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 268 - -
Lja4g1019 571 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 272 381 - -
Lja4g1019 571 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 381 552 - -
Lja4g1019 571 SMART tpr_5 482 515 IPR019734 GO:0005515
Lja4g1019 571 SMART tpr_5 399 432 IPR019734 GO:0005515
Lja4g1019 571 SMART tpr_5 448 481 IPR019734 GO:0005515
Lja4g1019 571 ProSiteProfiles TPR repeat profile. 482 515 IPR019734 GO:0005515
Lja4g1019 571 Gene3D Tetratricopeptide repeat domain 385 542 IPR011990 GO:0005515
Lja4g1019 571 SUPERFAMILY FKBP-like 147 265 - -
Lja4g1019 571 PANTHER PEPTIDYLPROLYL ISOMERASE 1 268 - -
Lja4g1019 571 PANTHER PEPTIDYLPROLYL ISOMERASE 381 552 - -
Lja4g1019 571 Coils Coil 515 535 - -
Lja4g1019 571 Pfam Tetratricopeptide repeat 483 515 IPR019734 GO:0005515
Lja4g1019 571 Gene3D - 263 384 IPR046357 GO:0003755
Lja4g1019 571 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 170 259 IPR001179 GO:0003755
Lja4g1019 571 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 284 379 IPR001179 GO:0003755
Lja4g1019 571 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 53 142 IPR001179 GO:0003755
Lja4g1019 571 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 57 145 IPR001179 GO:0003755
Lja4g1019 571 SUPERFAMILY FKBP-like 265 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1019 Lja-Chr4 8680220 8683262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1019 24 571 Calmodulin-binding Proteins AT5G48570 74.047 0.0 843