Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1015 ATGGGTGACCAAGATCAAAGAAGAACTCACACTTCAGGGCATGAGAGTCATGGAGTTCATGTGTGTCGCAAATGTGGGTGGCCATTCCCGAATCCACATCCAAGTGCCAAACACAGACGTGCGCACAAGAAGATCTGTGGAACCATTGAAGGCTACAAATTGGTTGGTTCAGATGATGAACATGTTTCTGATGATGATTTCAAGACACCAGGTTTGGTTGCGTCAGGTTCAAGTTCAATTGCCTTGGACCTGGTCAACAATGAGAAGGGTAATGATGGAATTGGGGAAAAGTTGGTTAGATCAGAAAGATCAGAAGATGATGTGTTTTCAGATGCGGTTGCTGAGTTTATGGATAGTGGATTGAGTCCAGGAATTAAGGAGCGTTTACAAGAAGAAAGTTTGGACTCAGGTACTGATGTGGAAGGAGTCCACATTAAAGAACAAATTCTTTCAGGGCCTTCTGAGCACAATGTGTTTAATGCTGCAGATGTTAGTCCATTAATTGTCAACTCAAGCAATGATGGCCAAATTGAAAATCCTGAAAGTTTGCAAAGTGCAAGTGTTGAAGTAGAAGACAAAACAGTGGAGTTGCAAGGTCCATTGTCAAGCTCTACCGTTGATTCATTTTCAAGTTTAGTTGCAGATTTGGGGACTAAAGAATCGACTGTTGCGCACGGTGACGATTTTGTTGGTTTGCCAAGTGACTCGCAGCCCAGCAACGCTGAAGTTATACCAGATGTATTGGTAGAAAAAAATATCCATGCTGTTGAAAATGTGGCAGATTGCAGTTCTATGTGTGTTGAAGAGGAAACTAATTTGGAAGGAAAGAATGAGATAAAATCAGAAAAAGTCATGGTTGAAATTGTCGACTCATCTGATAAAGAAGTGTCTGAAATAGCAATTAGTGATGCTGTTTCCTTGGACCATCAAGTGGGTGATGGAGTTGGTAATCTGAAGGAAAAGAATGGTGCTGTTCTCGTTTCATTGCTTCCCCAAGATGACTTCCCTCTTGAGTTAAACCCGTCCGTAATCACTAATGATGCTCAGGTAGAATCTGCACACACCACACAGTTTGCTATACTTGATGATAGACCTGATGCAACATATCTTCAGAGTGATTATGGAGATCACGAAGGAGTGATATTCCCAAATCCTTCAAGCCTACACTTGTCTGACTCATTGGAAGACAAGGAAGATGGATTAATGGGAACAATTACTGAAGAAGATGATTTTCATTTCATCACAAGCCAATTAAGTGAGAAAAGTAATATCCTCTCTTCAGATATGCATGTTATGGATAGTAGCGTGAAGTCAGAGCAGGTCAGCAGTGAGCCTATGACTGAAGACATCACACAGTTTGCTACACTTGATGATAGACCTGTTGTAACATATCTTCAAAGTGATTATGGAGATCACAAAGGAGTGATATTCCCAAATCCTCCCAGCCTACACTTGTCTGACTCATTGGAAGACAAGGAAGATGGATTAATGGGAACAATTACTGAGGAAGATGATTTTCATTTCATCACAAGCCAATTGAGTGAAAAAAGTGATGTCCTCTCTTCAGATATGCATGTTATGGATAGTAGCGTGAAGTCAGAGCAGATCAACAGTGAGCCTATGACTGAAGACATGCATGCTGAAGATTGTACTGAATTATCCCCAGTCAAGCTCACAGTTGAAAGTTATCAAAGTTCGCATGAAAGTGGTTTGTATATGAATGCCATGAAAACTGAGGTGAATGAGAATCATGTGGTTCATCTTTCTGAAGACCAGGGACCTGTTGGCGTTCAAAAAAATTCTCCACAGATAAGTTTAACTGAAGGTGATTCAGTGGCCCCATCAAATGAGAGTCAGAGGGATGCATCTGTTGAGAATGCAACCGGTGAAACAACTAGTGTCATTAACATAGGCAATGTAAGCCATCATGAGGAAATCATAACTGAAGTAAATAATGTAGCTTTAGATGGGCAGGGTGGAGAAGCTAATGTGGGAAATGATACTCAGATTATTTTGAATGATCTTCAACCCAGTGACCTCTTGCAACCATATGTCATGCAATCAAGTGACGTATTTAAGAGTGATGATGCTGGTGAAATGGGTAAAACCGAACAATGTGTTATAACTGATGCTCAATGCAAAGAAAATTTCACAGATAGAGATACTTCATCGTTTAACTCTTCTAGCAGTCATTTTGAAATCCCAGTTACTTCAGATGCTGTAATTGATGGCCCTGCGGGAAAGTCTAATGGTACAGAATGCAAAGATATAGATTCACTATCAGGTGCCCGGGAAGTCATGAAAGAAGATGAAATCAATGGCCAAATCAAACTAAGTGAAGAATGTGACAGATCTGCTGGAACTTTTGCTGATTCACACGAAGCACGAGATGCAGAACTATTAGTGAAGGCTGCAGAAGACCTTGCCAGGAAGTATACATCATTTACTTCTTTAAATACTGAGCCTTCTGCTCAGCATGATGCTGCTGTTGAAGGTAATCCAGGTGGAGAACATAGTGAGGATGTGACTTTGGTTACTGCTGTGCCTGTTCAAGATCAAAGTGGTAATAATTTGGTTAAACATAGTTCATCTGGATTTGATGCTTCAGTTTACTCTAGTAGCCGTTGTGACAGTTTGGAAGGCCACTGGGGTTCTGTTTCAGTTTTCTCTATGCAATCCAATGCACCATCGGGGACTGATACTGAAATTTTACCATCAACCGGTTCACTAGCATCAGCAGAGGCGGCGGATAAATCCTACTTGAACATTCCAAAAGCAGAAGCTGCATCTGAGAGACAGCAGTCCGGAAAATCAGAAATGCTCGAACCTCCGTCGTTCATGACATTGGTTGAGTCTAGCCATGTGGTTAGCCTTAAAGGTGCTGCTGCTTCAGAAGTCCAGAAATCACAACAGCCAGATTCCACTTCACAGGCTGGTTGGTTCCCCACTCAAACTCAGGTTAATAATGAGTCTCAAGGGAGAAAGAAGAATGAAGAAATAATAGCCAAGGTAACAAACTGGAGGAGCAACAGCAAGGGGCACACACCTCTAAAGAGCCTATTAGGCGAGGCTGCAAATAGCAGCAGCAAGCCTGAATCTCCAAAAACGGAAGAACATTCAGTGACTCAGAAGAATGGTAACAATGGTTCTGGATTGAAAACTGTTAACTCTATTCTGGGTCCTGAATCCCCTGGAGATCAAGTGGTGAAAGGAGATGCTGCAAAAGAATGGAACTCTCCGGCAAGATATCCTGCAGGCATCAAGAGAGAAAAAAGCAAAATCAAGAGCAGACCATTCTGGATACAATTGGTGTGCTGTTCATCAGTGGATCCTCAACGAAGGTAG 3345 0.4176 MGDQDQRRTHTSGHESHGVHVCRKCGWPFPNPHPSAKHRRAHKKICGTIEGYKLVGSDDEHVSDDDFKTPGLVASGSSSIALDLVNNEKGNDGIGEKLVRSERSEDDVFSDAVAEFMDSGLSPGIKERLQEESLDSGTDVEGVHIKEQILSGPSEHNVFNAADVSPLIVNSSNDGQIENPESLQSASVEVEDKTVELQGPLSSSTVDSFSSLVADLGTKESTVAHGDDFVGLPSDSQPSNAEVIPDVLVEKNIHAVENVADCSSMCVEEETNLEGKNEIKSEKVMVEIVDSSDKEVSEIAISDAVSLDHQVGDGVGNLKEKNGAVLVSLLPQDDFPLELNPSVITNDAQVESAHTTQFAILDDRPDATYLQSDYGDHEGVIFPNPSSLHLSDSLEDKEDGLMGTITEEDDFHFITSQLSEKSNILSSDMHVMDSSVKSEQVSSEPMTEDITQFATLDDRPVVTYLQSDYGDHKGVIFPNPPSLHLSDSLEDKEDGLMGTITEEDDFHFITSQLSEKSDVLSSDMHVMDSSVKSEQINSEPMTEDMHAEDCTELSPVKLTVESYQSSHESGLYMNAMKTEVNENHVVHLSEDQGPVGVQKNSPQISLTEGDSVAPSNESQRDASVENATGETTSVINIGNVSHHEEIITEVNNVALDGQGGEANVGNDTQIILNDLQPSDLLQPYVMQSSDVFKSDDAGEMGKTEQCVITDAQCKENFTDRDTSSFNSSSSHFEIPVTSDAVIDGPAGKSNGTECKDIDSLSGAREVMKEDEINGQIKLSEECDRSAGTFADSHEARDAELLVKAAEDLARKYTSFTSLNTEPSAQHDAAVEGNPGGEHSEDVTLVTAVPVQDQSGNNLVKHSSSGFDASVYSSSRCDSLEGHWGSVSVFSMQSNAPSGTDTEILPSTGSLASAEAADKSYLNIPKAEAASERQQSGKSEMLEPPSFMTLVESSHVVSLKGAAASEVQKSQQPDSTSQAGWFPTQTQVNNESQGRKKNEEIIAKVTNWRSNSKGHTPLKSLLGEAANSSSKPESPKTEEHSVTQKNGNNGSGLKTVNSILGPESPGDQVVKGDAAKEWNSPARYPAGIKREKSKIKSRPFWIQLVCCSSVDPQRR* 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1015 1114 MobiDBLite consensus disorder prediction 961 1078 - -
Lja4g1015 1114 MobiDBLite consensus disorder prediction 1 20 - -
Lja4g1015 1114 MobiDBLite consensus disorder prediction 1003 1031 - -
Lja4g1015 1114 MobiDBLite consensus disorder prediction 591 629 - -
Lja4g1015 1114 MobiDBLite consensus disorder prediction 963 991 - -
Lja4g1015 1114 MobiDBLite consensus disorder prediction 594 629 - -
Lja4g1015 1114 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
Lja4g1015 1114 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 449 - -
Lja4g1015 1114 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 457 1109 - -
Lja4g1015 1114 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 449 - -
Lja4g1015 1114 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 457 1109 - -
Lja4g1015 1114 MobiDBLite consensus disorder prediction 1040 1061 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1015 Lja-Chr4 8650594 8656257 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g1015 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1015 - - lja:Lj4g3v2577130.2 1788.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1015 4 8650594 8656257 Lja4g1015 4 8650594 8656257 ECH