Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1008 ATGCCTCACCCGAAAACCCTACTTTCTCTCTCTACACTCTCACTCCTCTTCTCCATCACCATCATCATCGCCGCCGATGACGGCCCCGTATTCGCCGCCACCGAAGACGCCGCCGTCATGTCCAAGCTTCTCAAATCCCTTTCGCCACCGCCCTCCGACTGGTCATCAACCACCCCATTCTGCCAATGGGACGGCATCAAGTGCGACTCCTCCAACCGCGTCACCACCATAAGCCTCGCCTCACGCTCCCTTACCGGAACACTCCCCTCCGATCTCAACTCCCTCTCACAACTCACCTCCCTCTCGCTCCAAAACAACGCCATCTCCGGCCCCATCCCTTCCCTCGCCAACCTCTCCGCCCTCAAAACCGCCTTCCTCGGCCGTAACAACTTCACCTCCGTCCCCTCCGCCTCCTTCGCTGGCCTCACCGACCTCCAGACCCTCAGCCTCAGTGATAACCCCAACCTCTCCCCCTGGACCCTCCCCACCGAGTTAACCCAGTCCACCAACCTCATCACTCTCGAACTCGGCACCGCAAGGCTCACCGGTCAGTTACCGGAAAGCTTCTTCGACAAGTTCCCTGGTCTCCAGAGCGTTCGTCTCTCCTACAACAACCTCACCGGAGCATTACCCAATTCTCTCGCCGCTTCCGCAATCGAAAATCTATGGCTCAATAACCAGGACAATGGGTTATCCGGCACCATCGATGTGCTTTCTAACATGACGCAGTTAGCTCAGGTTTGGCTTCACAAGAACCAGTTCACTGGTCCCATTCCCGATTTGTCACAATGCAGTAACCTGTTTGATCTGCAATTGAGGGATAACCAGCTAACCGGTCCGGTTCCGAATTCTCTGATGGGTCTAACGAGCTTGCAGAATGTTTCTCTGGATAACAATGAGCTTCAGGGTCCTTTTCCGGCCTTCGGCAAAGGGGTTAAGGTCACCCTTGATGGGATCAATAGCTTCTGTAAAGACACTCCGGGACCTTGCGATGCTAGGGTGATGGTTTTGCTTCATATTGCAGGGGCATTTGGGTATCCGATTAAGTTTGCGGGTTCTTGGAAAGGGAATGACCCTTGTCAGGGATGGAGTTTTGTTGTGTGTGATAGTGGGAGGAAGATCATCACGGTGAATTTGGCGAAGCAGGGTTTGCAAGGAACCATTTCGCCTGCGTTTGCCAATTTGACCGATTTAAGGAGCTTGTATCTCAATGGGAATAATTTGACTGGTTCTATACCTGAGAGTTTGACCACATTGACTCAGCTTGAGACTCTTGAGGTGTCTGACAACAACCTTTCTGGAGAGGTTCCGAAATTCCCACCAAAGGTGAAGCTACTGACAGCAGGTAATGTTTTGCTTGGACAAACAACGGGTTCTGGAGGCGGTGCAGGTGGCAAAACCACCCCATCTGCAGGGTCTACGCCGGAGGGAAGTCATGGTGAATCAGGAAATGGTTCTTCATTGACACCGGGTTGGATTGCTGGTATTGTGATTATTGTTTTGTTTTTTGTGGCTGTGGTGTTGTTTGTGTCTTGTAAGTGTTATGCCAAAAGAAGGCATGGGAAGTTCAGCAGGGTTGCTAATCCTGTGAATGGGAATGGAAACGTTAAACTTGATGTGATAAGTGTTTCTAATGGATACAGTGGTGCTCCGAGTGAGTTGCAAAGCCAGAGCAGTGGTGATCATAGTGAACTTCATGTTTTTGATGGTGGAAACAGTACTATGTCGATACTCGTTCTCCGACAAGTAACGGGTAATTTTAGCGAGGACAACATATTAGGCAGGGGAGGGTTTGGAGTTGTTTATAAAGGAGAGTTGCAGGATGGGACTAAAATTGCTGTCAAGAGGATGGAGTCTGTTGCAATGGGAAACAAAGGGTTGAATGAGTTCCAAGCAGAGATTACGGTTCTTAGTAAGGTGAGGCATAGACATTTGGTTGCTCTCTTAGGGCATTGTATCAATGGCAATGAGAGGCTCTTGGTGTATGAGTACATGCCACAAGGGACATTAACCCAGCATCTGTTTGAATGGCGTGAACTTGGTTATACTCCTTTGACATGGAAACAAAGGGTGACAGTAGCTTTGGATGTAGCACGCGGGGTGGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCACAGGGACTTAAAACCCTCGAACATACTATTAGGTGATGACATGAGAGCCAAGGTTGCTGATTTTGGGTTGGTTAAAAATGCACCAGATGGGAAGTATTCTGTTGAGACACGGTTGGCTGGAACATTCGGCTATCTTGCACCTGAGTATGCAGCAACTGGAAGAGTGACAACCAAAGTGGATGTTTATGCGTTTGGAGTAGTTTTGATGGAACTGATCACCGGCAGAAGGGCTTTGGATGATTCTCTGCCGGACGAAAGGTCTCACTTGGTAACATGGTTCCGCCGAGTCCTAATCAACAAGGAAAACATTCCAAAGGCAATTGATCAAACTCTAAACCCTGATGAGGAAACCATGGAGAGCATATATAAAGTGTCTGAGCTGGCTGGCCATTGCACTGCTCGTGAACCAAACCAAAGGCCGGACATGGGGCATGCCGTGAATGTCTTGGTTCCTATGGTGGAGCAATGGAAACCTACTAGCCGACACGAGGACGACGGCCATGACAGTGAACCTCATATGAGCCTTCCTCAAGTTCTGCAGAGATGGCAAGCCAATGAAGGCACTTCCACGATCTTCAATGACATGTCCTTATCACAAACCCAATCAAGCATCAACTCTAAAACTTATGGATTTGCTGACTCATTTGATTCACTGGATTGCCGGTAG 2808 0.4932 MPHPKTLLSLSTLSLLFSITIIIAADDGPVFAATEDAAVMSKLLKSLSPPPSDWSSTTPFCQWDGIKCDSSNRVTTISLASRSLTGTLPSDLNSLSQLTSLSLQNNAISGPIPSLANLSALKTAFLGRNNFTSVPSASFAGLTDLQTLSLSDNPNLSPWTLPTELTQSTNLITLELGTARLTGQLPESFFDKFPGLQSVRLSYNNLTGALPNSLAASAIENLWLNNQDNGLSGTIDVLSNMTQLAQVWLHKNQFTGPIPDLSQCSNLFDLQLRDNQLTGPVPNSLMGLTSLQNVSLDNNELQGPFPAFGKGVKVTLDGINSFCKDTPGPCDARVMVLLHIAGAFGYPIKFAGSWKGNDPCQGWSFVVCDSGRKIITVNLAKQGLQGTISPAFANLTDLRSLYLNGNNLTGSIPESLTTLTQLETLEVSDNNLSGEVPKFPPKVKLLTAGNVLLGQTTGSGGGAGGKTTPSAGSTPEGSHGESGNGSSLTPGWIAGIVIIVLFFVAVVLFVSCKCYAKRRHGKFSRVANPVNGNGNVKLDVISVSNGYSGAPSELQSQSSGDHSELHVFDGGNSTMSILVLRQVTGNFSEDNILGRGGFGVVYKGELQDGTKIAVKRMESVAMGNKGLNEFQAEITVLSKVRHRHLVALLGHCINGNERLLVYEYMPQGTLTQHLFEWRELGYTPLTWKQRVTVALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDSLPDERSHLVTWFRRVLINKENIPKAIDQTLNPDEETMESIYKVSELAGHCTAREPNQRPDMGHAVNVLVPMVEQWKPTSRHEDDGHDSEPHMSLPQVLQRWQANEGTSTIFNDMSLSQTQSSINSKTYGFADSFDSLDCR* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1008 935 ProSiteProfiles Protein kinase domain profile. 587 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1008 935 Gene3D Transferase(Phosphotransferase) domain 1 665 886 - -
Lja4g1008 935 SMART serkin_6 587 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g1008 935 SUPERFAMILY Protein kinase-like (PK-like) 563 863 IPR011009 -
Lja4g1008 935 CDD STKc_IRAK 593 863 - -
Lja4g1008 935 PANTHER OSJNBA0070M12.3 PROTEIN 32 935 - -
Lja4g1008 935 ProSitePatterns Protein kinases ATP-binding region signature. 593 615 IPR017441 GO:0005524
Lja4g1008 935 Pfam Protein tyrosine and serine/threonine kinase 590 861 IPR001245 GO:0004672|GO:0006468
Lja4g1008 935 ProSiteProfiles Leucine-rich repeat profile. 97 119 IPR001611 GO:0005515
Lja4g1008 935 Gene3D Phosphorylase Kinase; domain 1 550 664 - -
Lja4g1008 935 Gene3D Ribonuclease Inhibitor 332 456 IPR032675 -
Lja4g1008 935 MobiDBLite consensus disorder prediction 456 485 - -
Lja4g1008 935 Pfam Leucine rich repeat N-terminal domain 338 369 IPR013210 -
Lja4g1008 935 Pfam Leucine rich repeat N-terminal domain 35 69 IPR013210 -
Lja4g1008 935 SMART LRR_typ_2 118 141 IPR003591 -
Lja4g1008 935 SMART LRR_typ_2 395 419 IPR003591 -
Lja4g1008 935 SMART LRR_typ_2 193 216 IPR003591 -
Lja4g1008 935 SMART LRR_typ_2 142 168 IPR003591 -
Lja4g1008 935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 712 724 IPR008271 GO:0004672|GO:0006468
Lja4g1008 935 Pfam Leucine rich repeat 96 154 IPR001611 GO:0005515
Lja4g1008 935 Pfam Leucine rich repeat 376 432 IPR001611 GO:0005515
Lja4g1008 935 SUPERFAMILY L domain-like 40 441 - -
Lja4g1008 935 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 32 935 - -
Lja4g1008 935 Gene3D Ribonuclease Inhibitor 34 328 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1008 Lja-Chr4 8574034 8578004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1008 74 863 Receptor kinase-like Gene Family AT5G07280 31.946 1.39e-88 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Lja4g1008 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1008 - - gmx:100286794 1323.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1008 4 8574034 8578004 Lja4g1008 4 8574034 8578004 ECH