Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0995 ATGGACGGAGCGCCACCCTCCTCCGCCGCCGGAACCGGAGGCCCGGCGCCGTTCCTTCAGAAGACCTACGACATGGTCGACGATTCCTCCACCGACGACATCGTTTCTTGGAGCTCCACCAACAACAGCTTCGTCGTCTGGAACCCACCCGAGTTCGCTCGCCTCCTTCTCCCGACGTATTTCAAACACAACAACTTCTCCAGCTTCATCCGCCAGCTCAATACCTACGGATTTAGAAAAATACATCCTGAGCGATGGGAGTTTGGTAATGATGATTTTATAAAAGATCAAAAGCATCTTCTTAAGAATATACACCGCAGGAAACCTATCCACAGTCACAGTCATCCTCCAGGTTCTCTTGTAGATCCAGAAAGGTCAGCATTTGAGGAAGAAATAGAGAAACTTTTACGTGAGAAAAATTCTCTTGAATCCAATATTTTTAACTTCATACAACATCAGTCAACAGCAAAGCATCGACTCGAAGATTTTCAGCAGCGATTAGATGGTATGGAGAAGAGGCAGAAACAACTGCTGAACTTCTTCGAGAAGGCTCTTCAGAATCCTACTTTTGTTGAACATCTTTCACGCAAAATTGAATCCATGGATTTATCGGCTTATAATAAGAAAAGGCGATTGCCTCAGGTTGATGTTGATCAGTTGCAGCCAGTTGTCGAAAGTAGCTCTGTTGACAATCATAGCAATTTTAGAATGGAATTTGGGAATGTTATTCATCACGATTTCTCAAATAAGCTCAGACTGGAATTGTCACCAGCTGTTTCAGATATGAACTTAGTATCACATAGCACACAAAGTTCAAATGAAGACGGAGAAAGCCCACAGAATAAGCTGTCTGAAGGAGAACTGAAAGGAGTCCAGACGAGAACGGCTCTTGCTTTTGCACCTGAGACGTTAGAGCTTGCAGATACTGGGACATCTTTTACTTTTAAGATGGATCCATGTTTATCACAGAGAACGACAACTGCTGAAAGCTCGAAGCTGCACTCTATGGAGCCAAGTAGTGAAGAAGGTGATAGTCATATATCCTGCCAACTAAATTTAACTCTAGCGTCTTGTCCGTTACCAGCCAACAGAAACTCATACTCAGCCAGATCACCCCAAATAGATTGTCAAGAAATTGGCAAAATTGCTGAATCAAGATTTTATGCCAGTGGTAAAGAATCTGATATTGGAGTTTCCTCAAACCAAAATGTAGCTAATGAGGTTACCAATTTAGCTGCTCCAACTCCAAGTAGCAACCAAGTCAGCCCAGCTGCTCCAGATAGAGTGAATGATGTGTTTTGGGAACAGTTCCTTACAGAAAGACCAGGCTGTTCGGACAATGAAGAGGCGATATCCAACTATCGAGCCAACCCATACGATGAGCAAGAGGAAGGGAGATCAGTTCATGGAATCTCTAGAAACATTAAGGGTATGGATCAGCTCACACTTTGA 1452 0.436 MDGAPPSSAAGTGGPAPFLQKTYDMVDDSSTDDIVSWSSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFGNDDFIKDQKHLLKNIHRRKPIHSHSHPPGSLVDPERSAFEEEIEKLLREKNSLESNIFNFIQHQSTAKHRLEDFQQRLDGMEKRQKQLLNFFEKALQNPTFVEHLSRKIESMDLSAYNKKRRLPQVDVDQLQPVVESSSVDNHSNFRMEFGNVIHHDFSNKLRLELSPAVSDMNLVSHSTQSSNEDGESPQNKLSEGELKGVQTRTALAFAPETLELADTGTSFTFKMDPCLSQRTTTAESSKLHSMEPSSEEGDSHISCQLNLTLASCPLPANRNSYSARSPQIDCQEIGKIAESRFYASGKESDIGVSSNQNVANEVTNLAAPTPSSNQVSPAAPDRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQEEGRSVHGISRNIKGMDQLTL* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0995 483 SUPERFAMILY "Winged helix" DNA-binding domain 14 107 IPR036390 -
Lja4g0995 483 MobiDBLite consensus disorder prediction 326 345 - -
Lja4g0995 483 MobiDBLite consensus disorder prediction 459 483 - -
Lja4g0995 483 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 477 IPR027725 -
Lja4g0995 483 MobiDBLite consensus disorder prediction 265 288 - -
Lja4g0995 483 Gene3D - 12 108 IPR036388 -
Lja4g0995 483 SMART hsfneu3 14 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0995 483 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 11 477 - -
Lja4g0995 483 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0995 483 PRINTS Heat shock factor (HSF) domain signature 18 41 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0995 483 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0995 483 ProSitePatterns HSF-type DNA-binding domain signature. 57 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0995 483 Pfam HSF-type DNA-binding 18 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0995 483 Coils Coil 153 173 - -
Lja4g0995 483 MobiDBLite consensus disorder prediction 265 279 - -
Lja4g0995 483 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0995 Lja-Chr4 8456161 8459319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0995 1 483 HSF AT4G13980 54.858 1.64e-170 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja4g0995 HSF_DNA-bind 2.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0995 K09419 - gmx:100816484 815.068