Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0988 ATGCGGTGTTATGGCTTAACCATCCCCGGAGGAAGCGACCACCGCTGCTTCTTCATCCCCACCGTGACTCCGCCGTCACTAAGGCCCGTAACCCGAGTATCATTCGGGTTCGGGTCAGGGTTTCCGAAGCTGAAGGCGACTCTGGACAGCGGCGTCGTTGCTGTATCGGAGGAATTGAGCTTCTACGAGCTTCTGGGCATACCCGAATCCGGTTCGTTGGTCGATATCAAGCAAGCGTACAAGCAGCTAGCCCGGAAGTACCACCCGGATGTTTCGCCGCCGGGTCGGGTCGAGGAGTACACGAAGAGGTTCATTCAGGTGCAGGAGGCTTACGAGACGTTGTCTGATCCCAACACCAGAGCTATGTATGATCGAGACATGGCTAAAGGCATTCAGTTCGCCTTCAACGCTCGGAGACGCTACCATCAACGTGATCAGGTTGTTGAACAAAAGAGTGAATGGAAAAGTCGTTGGCAGTCTCAACTGTCTGAGTTGAAGAAAAGAAGTAAGAGCAAGGAAGATGGAGTGGGGAACATGTCATGGGCCGCCCGAATGCGCCAGCAGAGGGCTGAATCGTCATCATCTAATGAATTATGA 597 0.5343 MRCYGLTIPGGSDHRCFFIPTVTPPSLRPVTRVSFGFGSGFPKLKATLDSGVVAVSEELSFYELLGIPESGSLVDIKQAYKQLARKYHPDVSPPGRVEEYTKRFIQVQEAYETLSDPNTRAMYDRDMAKGIQFAFNARRRYHQRDQVVEQKSEWKSRWQSQLSELKKRSKSKEDGVGNMSWAARMRQQRAESSSSNEL* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0988 198 MobiDBLite consensus disorder prediction 157 198 - -
Lja4g0988 198 Pfam DnaJ domain 61 124 IPR001623 -
Lja4g0988 198 Gene3D DnaJ domain 52 157 IPR036869 -
Lja4g0988 198 PRINTS DnaJ domain signature 62 80 IPR001623 -
Lja4g0988 198 PRINTS DnaJ domain signature 80 95 IPR001623 -
Lja4g0988 198 PRINTS DnaJ domain signature 99 119 IPR001623 -
Lja4g0988 198 SMART dnaj_3 59 119 IPR001623 -
Lja4g0988 198 ProSiteProfiles dnaJ domain profile. 60 127 IPR001623 -
Lja4g0988 198 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 41 193 - -
Lja4g0988 198 MobiDBLite consensus disorder prediction 160 174 - -
Lja4g0988 198 PANTHER CHAPERONE PROTEIN DNAJ 20, CHLOROPLASTIC 41 193 - -
Lja4g0988 198 CDD DnaJ 61 116 IPR001623 -
Lja4g0988 198 ProSitePatterns Nt-dnaJ domain signature. 104 123 IPR018253 -
Lja4g0988 198 SUPERFAMILY Chaperone J-domain 55 135 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0988 Lja-Chr4 8375017 8377827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0988 56 124 C2H2 Transcription Factor Family AT1G74250 43.056 1.31e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0988 - - cam:101492872 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0988 4 8375017 8377827 Lja4g0988 4 8375017 8377827 ECH