Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0986 ATGGCTGATCGGAGTTTGACAGTTGTGAAGCCGGTATGGATGAAGCAAGCGGAGGAGGCGAAGCTGAAGACGGAGGCCGACAAAGCTGCGGCAGCCAAAGCCGCGTTTGAGGCCACATTCAGGGATTTGGAGAAGGCTCATGAGAAGGGGGGGCCTGCTGTTCAATCGGATAGTGATTCTGATGAATGGGATGAGGATTATGCCAAGAAGAAGCCTATTGGGCCGGTGGATCCGGCGAAGTGTACTGCTGCGGGGACCGGGATAGCCGGCGGGACGGCTTGTGCTCCGTCTTCGTTTTCGGTTGTGACTAAGGATTCGGATGAGAGGAAGGTTTCAAGTGGGGGTGCTTTGATCAAGGTGAAAGTGACACCGGGATTGGGGGTTGGTGGGTCGGATCAAGAAGGGATTGTCAAGGATATGGGTGATGGAACGTATACTGTTACGTATGTGGTGCCAAAGAGAGGGAATTATATGGTCAATGTCGAATGCAATGGCAAGCCTATCATGGGTAGTCCATTTCCTGTGTTTTTCAGTGCAGGTAATAGTAATGGAGGGCTGCTGGGTTTAGCTCCTGCATCTTCATTTCCAAATCTGGTAAATCAAACTATGCCCAACATGCCAAATTACTCTGGGTCTGTTTCAGGGGCATTCCCGGGACTATTGGGAATGATTCCAGGGATTATTACCGGAGCTTCTGGCGGTGCTATTTTACCAGGAATTGGGGCCTCACTGGGGGAAGTTTGTCGTGATTACCTAAATGGGCGCTGTGCAAAAGTTGATTGTAAGTTGAATCACCCACCTCATAATTTGCTTATGACTGCCTTAGCTGCAACAACTTCAATGGGAACACTTAGCCAAGCTCCTATGGCGCCTTCTGCTGCTGCGATGGCCGCCGCTCAGGCAATAGTTGCTGCCCAAGCCCTTCAAGCTCATGCAGCTCAGGTGCAAGCTCAGTCAGCTAAAGATTCCACTGGTTCACCTGAAAAAACTAATAAAGAGGATGCATTGAAGAAAACCCTTCAAGTTAGCAATCTAAGTCCCGTTCTCACTGTGGAACAGCTAAAACAACTCTTTGCTTTCTGTGGCACTGTTGTTGATTGTACAATCACTGAGTCAAAGCATTTTGCATATATAGAATACTCGAAACCTAAAGAGGCAACTGCTGCTTTGGCATTAAACAACATTGATGTTGGGGGGCGCCCTTTAAATGTTGAAATGGCAAAATCACTTCCGCCGAAACCATCTGTTGTGAATTCTTCACATGCTTCATCCTCTCTTCCTTTAATGATGCAGCAAGCTGTTGCAATGCAACAGCAGCAATTCCAGCAAGCACTGCTTATGCAACAAACTATGACTGCACAGCAGGCTGCTAACCGAGCTGCAACCATGAAATCTGCCACAGACTTAGCAGCAGCACGAGCTGCAGAAATAAGTAAGAAATTGAATCCTGATGGACTTGTGATTGAAGAAAAAGAGACAAAACAGAAATCCAGATCACCTTCTCCCCCTCGTGGAAGATCTCGATCAAAGTCGAGATCTCCTATCAATTACAGGAGAAGGAGGAAGTCTCGTTCCTATTCACCTGCTCCCCATTTTAGGGATCGGAGGTCCAGGTCACCATTGAGGTTGCGCCATCACTCGGGCTATGAAAGGGGTCGGAGGTCCTTTAGAGACACCAGGGAACATAGTGATAGGTGGTATAGAAGACGAGATTCAGATAGATTTCTAGATCATCATTCATCTGCTTCAAGAAGACATAGAAGTAGGAGTGCGAGCCCCTATACACGGAAATCATCTGTTTCTCCGAAACGTCACAGGAAAAGTTCACCTCATAGAGGAAGAAAACAGTCACGTGCTGATTCTGGCTCTCCAAGTCATCGCAGAGGAAGTAGGTCTTCTCCAAAGATTGATGAAAAAAAACTACGAAACAGAAGGGACTCGAGGTCTAGTTCTTCGGATGATAAGCCTAACTCCTTCAACAAAGATGAAGAAATCTTGCAGGAAAAGTCTAAACACAGAGAGAGAAAGCGGTCCAGGTCAGTATCTGTGGATGAGAAGCCTCAGAGAAGAAGCCGATCATCCCCAAGAAAAGTGGATGAAAGCGGATCCAGGCACAAGAAGCGGTCCAGGTCAAAATCTGTGGAGGATAAGCACAACTTCCCTGAGAAATTGGAGGAAAACAGAATCCGAAAGTCAAGGCATAATGACAAAAGGCACTCCAGATCAAGATCTACAGAAAGTAGGGATCAAACTGATGCTAGAGAGGATGAAAGAAAATATGGAAAGTCAAAACATCGTGATAGTAAAAGGACCAGATCCAAATCTGTTGAAGGGAAGCATCGTTCCAAAGATAAATCAGGTGAAGTAAAAGATAAGAAATCAAAGCATCGTGATAGAAGGCGTTCAAGGTCAGTATCATTAGAAGGTGATCATGACATAGGAGGCACTTCATCCCGTAAAAATTTGGATGAGAGCAATTTTGAACGCAGACGATTGAGGTCAGGCAGGCATCAATCCAGTGATAAATATGGAAATGGAGATGTAAGATCAGAACATCAAGAGAAAATCCTGTCTAAATTGAAATCAGAACATCATGATGGGAGTGGGCCCTCTACAAGAAGTTCCAAGGAGTATGAATCAACTAGTATAACAAAATATGACTCTGGATCTGTAGAAGTTAAGCATCAGTCAAGTGATGGAGAAAATGCTTCTAGTGTAGAGAATTCAAAACATCTTGAAGATGCCATACAGGAACCAATTATAAACATGAAGGACTCAACAAACCTGAATGATAATGGGATGTTGAATTCAGTGAATGAGAACTACAAGTCAGAAAGGTCAACTGAAAATGCAGGAGCTGATGAAAATCCAGGTTGGAAACGTGGGGAGGAAGTGGAAAATGGGAAATACTAA 2913 0.4514 MADRSLTVVKPVWMKQAEEAKLKTEADKAAAAKAAFEATFRDLEKAHEKGGPAVQSDSDSDEWDEDYAKKKPIGPVDPAKCTAAGTGIAGGTACAPSSFSVVTKDSDERKVSSGGALIKVKVTPGLGVGGSDQEGIVKDMGDGTYTVTYVVPKRGNYMVNVECNGKPIMGSPFPVFFSAGNSNGGLLGLAPASSFPNLVNQTMPNMPNYSGSVSGAFPGLLGMIPGIITGASGGAILPGIGASLGEVCRDYLNGRCAKVDCKLNHPPHNLLMTALAATTSMGTLSQAPMAPSAAAMAAAQAIVAAQALQAHAAQVQAQSAKDSTGSPEKTNKEDALKKTLQVSNLSPVLTVEQLKQLFAFCGTVVDCTITESKHFAYIEYSKPKEATAALALNNIDVGGRPLNVEMAKSLPPKPSVVNSSHASSSLPLMMQQAVAMQQQQFQQALLMQQTMTAQQAANRAATMKSATDLAAARAAEISKKLNPDGLVIEEKETKQKSRSPSPPRGRSRSKSRSPINYRRRRKSRSYSPAPHFRDRRSRSPLRLRHHSGYERGRRSFRDTREHSDRWYRRRDSDRFLDHHSSASRRHRSRSASPYTRKSSVSPKRHRKSSPHRGRKQSRADSGSPSHRRGSRSSPKIDEKKLRNRRDSRSSSSDDKPNSFNKDEEILQEKSKHRERKRSRSVSVDEKPQRRSRSSPRKVDESGSRHKKRSRSKSVEDKHNFPEKLEENRIRKSRHNDKRHSRSRSTESRDQTDAREDERKYGKSKHRDSKRTRSKSVEGKHRSKDKSGEVKDKKSKHRDRRRSRSVSLEGDHDIGGTSSRKNLDESNFERRRLRSGRHQSSDKYGNGDVRSEHQEKILSKLKSEHHDGSGPSTRSSKEYESTSITKYDSGSVEVKHQSSDGENASSVENSKHLEDAIQEPIINMKDSTNLNDNGMLNSVNENYKSERSTENAGADENPGWKRGEEVENGKY* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0986 970 CDD RRM_SF 340 405 - -
Lja4g0986 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 338 409 IPR000504 GO:0003723
Lja4g0986 970 MobiDBLite consensus disorder prediction 770 793 - -
Lja4g0986 970 MobiDBLite consensus disorder prediction 713 732 - -
Lja4g0986 970 MobiDBLite consensus disorder prediction 577 970 - -
Lja4g0986 970 MobiDBLite consensus disorder prediction 543 563 - -
Lja4g0986 970 MobiDBLite consensus disorder prediction 739 763 - -
Lja4g0986 970 SUPERFAMILY RNA-binding domain, RBD 337 418 IPR035979 GO:0003676
Lja4g0986 970 MobiDBLite consensus disorder prediction 956 970 - -
Lja4g0986 970 SMART rrm1_1 339 405 IPR000504 GO:0003723
Lja4g0986 970 Gene3D Immunoglobulins 75 182 IPR013783 -
Lja4g0986 970 Coils Coil 14 34 - -
Lja4g0986 970 MobiDBLite consensus disorder prediction 614 706 - -
Lja4g0986 970 PANTHER SPLICING REGULATORY GLUTAMINE/LYSINE-RICH PROTEIN 1 1 733 - -
Lja4g0986 970 MobiDBLite consensus disorder prediction 801 872 - -
Lja4g0986 970 MobiDBLite consensus disorder prediction 501 526 - -
Lja4g0986 970 MobiDBLite consensus disorder prediction 44 72 - -
Lja4g0986 970 SUPERFAMILY E set domains 75 175 IPR014756 -
Lja4g0986 970 Pfam Filamin/ABP280 repeat 75 173 IPR017868 -
Lja4g0986 970 MobiDBLite consensus disorder prediction 873 905 - -
Lja4g0986 970 Gene3D - 298 417 IPR012677 -
Lja4g0986 970 MobiDBLite consensus disorder prediction 921 946 - -
Lja4g0986 970 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 733 - -
Lja4g0986 970 ProSiteProfiles Filamin/ABP280 repeat profile. 73 177 IPR017868 -
Lja4g0986 970 ProSiteProfiles Zinc finger C3H1-type profile. 247 268 IPR000571 GO:0046872
Lja4g0986 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 342 402 IPR000504 GO:0003723
Lja4g0986 970 SMART flmn_3 77 180 IPR001298 GO:0005515
Lja4g0986 970 MobiDBLite consensus disorder prediction 483 563 - -
Lja4g0986 970 MobiDBLite consensus disorder prediction 483 499 - -
Lja4g0986 970 MobiDBLite consensus disorder prediction 599 613 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0986 325 408 Eukaryotic Initiation Factors Gene Family AT2G23350 36.667 1.58e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0986 - - gmx:100790138 1252.27