Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0975 ATGGCTATTGATGTAAAGCACTATTGGAAATCTGACTCACCTTCAAGTCCTATAGTTGGAGATTCTCTGGAAATCCATATCTCTGTTATGCTTGATACCTTGATAGGTCGTGTAGTTAAACCCTCACCTCGTTTCACTTACGAACAACCCCAATCGTTTTTTCAAGGGTGCGAAGATTATGTACGAAAATTCTTATCCTACCATTTGTATACACTCTCAGATCTCAACCAAGTGACGGACGAGATTAACTTTTTTATCCGAGAAAAGTATTCTTCTGAAGATGACAATGATGCTGTTAATACCGTTGCAGCGGAATCAGAACCACCGCGAGAGTTTTGTTTGTTCATTCGTATTGGTAGTGAAGACGAGTTGAGAGAGAAAATCAAAGAAAAGGGTTGCGGTGTGTGTATGAAGGAGTTCTACGGTGATGGTTGTTATGACGTAGCTTGGATGCCTTGCGTTCACGCCTTTCACAGAATATGCATTGCGACTTGGTTGCGTGCCGATGGTTTCTGCCCCGTGTGTCGCATGTCTCTACGAGTAAAAAAAGCTGGCAATTTCCCGTGTTCCACTAATTAA 579 0.4214 MAIDVKHYWKSDSPSSPIVGDSLEIHISVMLDTLIGRVVKPSPRFTYEQPQSFFQGCEDYVRKFLSYHLYTLSDLNQVTDEINFFIREKYSSEDDNDAVNTVAAESEPPREFCLFIRIGSEDELREKIKEKGCGVCMKEFYGDGCYDVAWMPCVHAFHRICIATWLRADGFCPVCRMSLRVKKAGNFPCSTN* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0975 192 CDD RING-H2 133 176 - -
Lja4g0975 192 Pfam Ring finger domain 133 176 IPR001841 -
Lja4g0975 192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 185 IPR013083 -
Lja4g0975 192 SMART ring_2 133 175 IPR001841 -
Lja4g0975 192 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 111 177 - -
Lja4g0975 192 SUPERFAMILY RING/U-box 132 182 - -
Lja4g0975 192 ProSiteProfiles Zinc finger RING-type profile. 133 176 IPR001841 -
Lja4g0975 192 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 111 177 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0975 129 179 C3H Transcription Factor Family AT1G74620 45.098 9.76e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0975 - - lja:Lj4g3v2603740.1 159.844