Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0972 ATGGCGGGCGTTTCGCTCATGTGCGGCGACTGCGGCGTTCTGCTGAGGTCCGTAGAAGAAGCTCAGGAGCACGCCGAGCTCACCTCCCACTCCAACTTCTCCGAATCCACCGAACCCGTTCTCAACCTCGTTTGCTCCGCTTGCTCCAAACCCTGCCGATCCAAAACCGAGAGTGATTTGCACACGAAGAGAACTGGACACACTGAGTTTACTGACAAGACTTCAGAGACAGTGAAGCCAATAAGTTTAGAGGCTCCGAAGGTGGATGCAATGGCAGAGGATCCTATTGGTGCAACCACTGACCAAACTGAAGAGATGATTGTTCCGGAAGTTGACAAAAAGCTGCTCGAAGAACTTGAATCAATGGGGTTTTCAACCGCACGAGCAACACGGGCGCTTCATTATTCTGGTAATGCTGGCCTTGAGTCTGCTGTAAATTGGATAGTAGAGCATGAGAATGACTCTGACATAGATCAGATGCCCTTGGTACCTGCCAACACCAAAGTTGTTGCCTCTAAACCTTCTCTTACCCCTGAAGAATTGAAGGCCAAACAACAGGAACTAAGGGAGAGGGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGAGAATGGAGAGAGAAAGAGAAAAGGAGAGGATTCGAATTGGCAAAGAGTTGCTGGAAGCAAAGAGGATTGAAGAAGACAATGAGAGAAAACGATTGTTGGCTTTGAGAAAAGCAGAGAAAGAGGAGGAGAGAAGGGCTAGAGAGAAAATCAAGCAGAAGTTGGAAGAAGACAAGGCTGAGAGAAGGCGCAAACTTGGATTGCCTCCGGAGGAGCCATCAGCAGCCAAACCTTCAACTGTTGTAGAGGAGAAAAAGAGTTTTCTGCCAGTTAGGCCTGCTACAAAAGCTGACCAAATGAGAGAGTGCTTGCGTTCTCTCAAGCAGAACCACAAGGAGGATGATGCCAGAGTAAAGAGAGCATTCCAAACTCTTCTAACTTATGTGGGGAATGTTGCCAGAAATCCTGATGAAGAAAAATTCAGGAAGATTCGTCTTAGTAACCAAACTTTTCAGGATAGAGTTGGTGGCTTGAAAGGAGGGATAGAATTCCTGGAAGTTTGTGGGTTTGAGAAGATCGACGGGGGTGAGTTTTTGTTTTTGCCTAGGGACAAGGTTGATATTGCAGTCCTGAATTCAGCTGGGTCTGAACTGGACTCTGCAATAAAGAATCCCTTTTTTGGAGTTCTTTAG 1233 0.4696 MAGVSLMCGDCGVLLRSVEEAQEHAELTSHSNFSESTEPVLNLVCSACSKPCRSKTESDLHTKRTGHTEFTDKTSETVKPISLEAPKVDAMAEDPIGATTDQTEEMIVPEVDKKLLEELESMGFSTARATRALHYSGNAGLESAVNWIVEHENDSDIDQMPLVPANTKVVASKPSLTPEELKAKQQELRERARKKKEEEEKRMEREREKERIRIGKELLEAKRIEEDNERKRLLALRKAEKEEERRAREKIKQKLEEDKAERRRKLGLPPEEPSAAKPSTVVEEKKSFLPVRPATKADQMRECLRSLKQNHKEDDARVKRAFQTLLTYVGNVARNPDEEKFRKIRLSNQTFQDRVGGLKGGIEFLEVCGFEKIDGGEFLFLPRDKVDIAVLNSAGSELDSAIKNPFFGVL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0972 410 MobiDBLite consensus disorder prediction 173 209 - -
Lja4g0972 410 Coils Coil 181 213 - -
Lja4g0972 410 Pfam PUB domain 317 388 IPR018997 -
Lja4g0972 410 SUPERFAMILY UBA-like 98 164 IPR009060 GO:0005515
Lja4g0972 410 SMART uba_6 112 150 IPR015940 -
Lja4g0972 410 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Lja4g0972 410 CDD PUB_UBA_plant 304 410 - -
Lja4g0972 410 Gene3D - 112 158 - -
Lja4g0972 410 Gene3D - 302 400 - -
Lja4g0972 410 MobiDBLite consensus disorder prediction 251 285 - -
Lja4g0972 410 MobiDBLite consensus disorder prediction 180 209 - -
Lja4g0972 410 MobiDBLite consensus disorder prediction 251 270 - -
Lja4g0972 410 Pfam UBA/TS-N domain 116 148 IPR015940 -
Lja4g0972 410 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Lja4g0972 410 PANTHER F13M7.16 PROTEIN 1 410 - -
Lja4g0972 410 SUPERFAMILY PUG domain-like 294 406 IPR036339 -
Lja4g0972 410 SMART PGNneu 320 383 - -
Lja4g0972 410 PANTHER F13M7.16 PROTEIN 1 410 - -
Lja4g0972 410 Coils Coil 224 261 - -
Lja4g0972 410 CDD UBA_PUB_plant 110 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0972 Lja-Chr4 8237031 8242256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0972 93 410 C2H2 Transcription Factor Family AT1G04850 78.193 1.48e-152 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0972 K24348 - gmx:100794687 657.521