Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0960 ATGGATTTCCAAGTCGTCGTTCTCGGCGGTGGCGTCTCCAAGAACCTCCTCCCTCTCGTCTCTCAGGAGCTTCCAAAAGCGTTACTTCCGGTAGCGAATCGTCCAGTTCTCTCTTACGTCCTTGAGTTACTGGAGCTCAGCAACCTCAAAGATCTCATTGTGGTAGTTGAAGGCGAAGACGCCGCTCTTCATGTTGGAGGTTGGATTTCTGGAGCTTATGCTGATCGCCTCCACGTCGAGGTTGCTGCGGTTCCTGAGGATGTGGGAACAGCCGGTGCGATTCGGGCCATTGCACGCCACCTAACTGCTAAAGACATTTTGGTTATTAGTGGTGATGTTGTTTCTGATGTGCCGCTTGGTGCTGTTGCAGCTGCTCATAGACGGCATGACGCGGTTGTCACTGCGATGCTTTGCCCTGCACCTGTTAGTGGACCTTCGGAGTCGGTCTCGTCTGGCGGGAAGGATAAAACCAAGAAGCCTGGACGCTATGATTTAATAGGGCTGGACCCAACTAAACAGTTTTTACTTCACATAGCAACTGGAGCTGAAGTTGAAAAAGATCTTCGAGTTCAGAAGAGCATTCTCCGTGCAGCCGGACAGATAGAAATAAGAGCTGATCTAATGGATGCCCACTTGTATGCATTTAAAAGATCAGTTTTACAAGAAGTTCTAGATGAGAAGGTTGCATTTCATAGCTTGAAGCATGACGTATTGCCATATCTTGTCCGGAGCCAACTGAAATCAGAAGTATTATTAAATGGTAGTCCGCAAGCAGAAGAAAATGGAAATGAGAAGGTTATTTCTCAAAGCAATCAGCAAATGCTATCTCAAATACTTGCTAATGCATCTGAACTGACTTTTCATCAACGACATGCTCTGGGTCCTAATGGTTATGGTCCTACTTCTGCTCGAAAAACCCATAAATGCTGTGTTTATATTGCTGGAAGTGGCAAGTACTGTGCTCGTCTAAATTCTATACAAGCATACAGCGACATAAACAGAGATTTAATAGGAGAATCCAATCATTTGTCAGGGTATTCCTTCTCCGCTCATAATAACTTTATCGATCCTACTGCGGAGCTGGGGGCAAAAACCACTATTGGACCACATTGTATGCTGGGGGAAGGTTCACAGATGGGTGACAAATGCAGTGTAAAACGGTCTGTCATTGGCCGTCACTGCAGGATAGGTGCGAATGTTAAGATTGTTAATTCAGTAGTGATGAATCATGTTACTATTGGAGACTCTTGTTCAATTCAAGGTTCTGTTATCTGCAGCAACGTACAGCTCCAAGAACGTGCTGTGCTAAAAGATTGTCAAGTTGGAGCAGGTTTCGTGGTCACTGCTGGTAGTGATTACAAAGGGGAGGTGTTGGCTAAGAAATGA 1386 0.4553 MDFQVVVLGGGVSKNLLPLVSQELPKALLPVANRPVLSYVLELLELSNLKDLIVVVEGEDAALHVGGWISGAYADRLHVEVAAVPEDVGTAGAIRAIARHLTAKDILVISGDVVSDVPLGAVAAAHRRHDAVVTAMLCPAPVSGPSESVSSGGKDKTKKPGRYDLIGLDPTKQFLLHIATGAEVEKDLRVQKSILRAAGQIEIRADLMDAHLYAFKRSVLQEVLDEKVAFHSLKHDVLPYLVRSQLKSEVLLNGSPQAEENGNEKVISQSNQQMLSQILANASELTFHQRHALGPNGYGPTSARKTHKCCVYIAGSGKYCARLNSIQAYSDINRDLIGESNHLSGYSFSAHNNFIDPTAELGAKTTIGPHCMLGEGSQMGDKCSVKRSVIGRHCRIGANVKIVNSVVMNHVTIGDSCSIQGSVICSNVQLQERAVLKDCQVGAGFVVTAGSDYKGEVLAKK* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0960 461 CDD LbH_eIF2B_gamma_C 372 451 - -
Lja4g0960 461 Pfam Nucleotidyl transferase 6 146 IPR005835 GO:0009058|GO:0016779
Lja4g0960 461 Gene3D Hexapeptide repeat proteins 348 454 - -
Lja4g0960 461 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 347 IPR029044 -
Lja4g0960 461 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA 1 461 - -
Lja4g0960 461 MobiDBLite consensus disorder prediction 142 162 - -
Lja4g0960 461 SUPERFAMILY Nucleotide-diphospho-sugar transferases 4 427 IPR029044 -
Lja4g0960 461 CDD eIF-2B_gamma_N 3 220 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0960 316 453 Eukaryotic Initiation Factors Gene Family AT4G18300 30.519 1.46e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0960 K03241 - gmx:100799460 781.941