Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0956 ATGGCAGGGACAAGTTTTTCCTTGGCGCACAGTGAGCCAAGACTAGTGGCGCCAGCAGGACCAACTCCACAAGAAGTAAAGAAGCTCTCAGACATAGATAGCCAAGAAGGGCTTCGTTTTCAGTTTCCTCTAGTAATGTTCTACCAAAACAGTCCAATCATGGAAGGAAAAGACCCTGCTGTGATAATAAAACATGGTTTGGCTGAAGCACTTGTTCACTATTACCCACTTGCTGGTAGGCTCATAGAAGGGCCTAACAGGAAGTTAATGGTGGATTGCAGTGGTGAGCTGGGGATTTTGTTCATTGAAGCTGATGCTGATGTTTCTCTCCAGCAGCTAGGGAATGCAATTCTTCCACCTTGTCCTTACATGAAAGACCTCCTTCTTGAGGTGCCTGGATCTGAAGGAATTCTTGGATGCCCTTTGTTGTTGGTTCAGTTCCTCACCCTGGTGAGTGAGATTGCAAGAGGAGCTTGCATATCCCAGTACCCAGTATGGCAAAGAGAACAACTCTTCAGCACAGGTGATCCACCGCGACTCGCACGTGCACACCCCGAATATGATCATGATCATGAAATTGAGAATATCAACAACAACATGACCCATGAATCATTTTTCTTTGGGTCCAAAGAGATAGCATCAATTCAGAATCACCTTCCACAAAACCTTAAAAATTGCACAACTTTTGATATGATCTCTGCCTGTTTGTGGAAATGCCGCACCAAAGCACTTGGGCTGAATCCTAATGAGGTACCTGGTTTGGAAGTGCCAAGTGGGTACTATGGTAATGCCTTTGCTTTCCCAATTGCACTCTCAAGGGCTGGGCTTTTGTGTGAAAGCCCATTGGAGTATGCATTGGGCTTGATAAAAAATGCAATGGCCCAAATGAGTGCTGAGTACATGAGCTCTGTGTCTGATTTTATGGTTCTTAAAGGCTATCCAAAGTATAGGACAAGAGGGAACTACCTTGTTGGTGACACTACTCGTGTGGGGTTTGATGATGTTGATTTTGGGTGGGGGGAGCCTGTGTATGGTGGCCCAGCTGGAGCTATACCATTTGTTAGCCTTTATGGACGGTTCAGAAACAGTGAAGGAGAGGAGGGAATTGTGGTACCAATGTTGTTGCCACCCCTTGTCATGAAGAGGTTTCTTTCTGAGCTGGTGAAGATCACAACTGAGGAGCATGTTGGTTTATCTTATAACATGATTATGTCCAAGTTCTGA 1224 0.4526 MAGTSFSLAHSEPRLVAPAGPTPQEVKKLSDIDSQEGLRFQFPLVMFYQNSPIMEGKDPAVIIKHGLAEALVHYYPLAGRLIEGPNRKLMVDCSGELGILFIEADADVSLQQLGNAILPPCPYMKDLLLEVPGSEGILGCPLLLVQFLTLVSEIARGACISQYPVWQREQLFSTGDPPRLARAHPEYDHDHEIENINNNMTHESFFFGSKEIASIQNHLPQNLKNCTTFDMISACLWKCRTKALGLNPNEVPGLEVPSGYYGNAFAFPIALSRAGLLCESPLEYALGLIKNAMAQMSAEYMSSVSDFMVLKGYPKYRTRGNYLVGDTTRVGFDDVDFGWGEPVYGGPAGAIPFVSLYGRFRNSEGEEGIVVPMLLPPLVMKRFLSELVKITTEEHVGLSYNMIMSKF* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0956 407 Pfam Transferase family 145 385 - -
Lja4g0956 407 Gene3D - 9 186 IPR023213 -
Lja4g0956 407 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 7 146 - -
Lja4g0956 407 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 144 391 - -
Lja4g0956 407 PANTHER LOW QUALITY PROTEIN: METHANOL O-ANTHRANILOYLTRANSFERASE-LIKE 7 146 - -
Lja4g0956 407 PANTHER LOW QUALITY PROTEIN: METHANOL O-ANTHRANILOYLTRANSFERASE-LIKE 144 391 - -
Lja4g0956 407 Gene3D - 187 385 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0956 Lja-Chr4 8139344 8143823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0956 15 390 Monolignol Biosynthesis Gene Families AT5G48930 26.682 1.16e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0956 - K19861 gmx:100817429 582.408