Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0953 ATGGCTGTGCCGTTACTCACCAAGAAGATCGTCAAGAAGTTCAAGATACATACATCTTCACTTTTCCATTCTGCTTCTTTGATTTCTGTTCTGATTCGAACCTATCGTGTTAGGAGAAAGTTCAAGGGATGCACTTTGATGCCAAATATTTGTTATGTCTTCAGACAAAAAGACTCAACTTACTGTGCTGAGATTGCACACAATGTATACACTAGGAAGAGAAAGGATATAGTTGAGAGAGCTGTGCAGCTTGATGTTGTTGTGACTAACAAAACAGCTAGACTGCGAAGCCAGGAGGATGAATAG 306 0.402 MAVPLLTKKIVKKFKIHTSSLFHSASLISVLIRTYRVRRKFKGCTLMPNICYVFRQKDSTYCAEIAHNVYTRKRKDIVERAVQLDVVVTNKTARLRSQEDE* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0953 101 SUPERFAMILY Ribosomal protein L32e 35 99 IPR036351 -
Lja4g0953 101 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 58 101 IPR001515 GO:0003735|GO:0005840|GO:0006412
Lja4g0953 101 PANTHER - 1 56 - -
Lja4g0953 101 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 1 56 IPR001515 GO:0003735|GO:0005840|GO:0006412
Lja4g0953 101 PANTHER - 58 101 - -
Lja4g0953 101 Pfam Ribosomal protein L32 56 90 IPR001515 GO:0003735|GO:0005840|GO:0006412
Lja4g0953 101 SMART Ribosomal_L32e_2 11 90 IPR001515 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0953 Lja-Chr4 8116904 8118412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0953 1 101 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 47.059 1.19e-29 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0953 K02912 - sind:105170109 110.538