Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0940 ATGAAGAGCAAGTCCAATTTTCTTGGTGTGAGACAAAGGCCTTCTGGGAAATGGGCAGCAGAGATCAAAGACACATCTAGGAAGATCAGATTATGGCTTGGGACTTATCAAACCGCGGAAGAAGCTGCTCGAGCTTACGATGAGGCTGCTTGCTTCCTCAGAGGTTCAAACACTCGCACCAACTTCTCCACTCATGGCATTGCTGCCAATTCTCCTATATCTCTAAAACTCAGAAAACTACTTGATCGTAAAGCCATCTCAAACCAAATTCGAAACCATAACATTATGATTAATCCTACTTTCCAAGTTGCTGATTCTGTTGCAGCTAGTCCAAATGGCATCATGGTCATGGAAGACAATAATTCTGCATGTACTAGTGGTGAGAATTTGTCTTTGTTTACGGTTCAGAACCAAGTCTCTGATAATCCATATGGGTTAGATATGAATGTGATCAACTGCTCAATGTCTGTCGCACCAAATACATCCCATTTTGATTGCTATTGGCCATTACCCCAACAGAGGATTAACGAGTTACCAATACCGAAATATGATTTGGATGTAGAACGACACTTGTCAACCTCGGTTTATGGCATGAATGAGTGCTACTTGGAGGATGCATATGAATCTAAGTATGAATATGATGTCAATTATCCTCTCTCCAGTTTGTTGAACTTCACTTGA 681 0.4112 MKSKSNFLGVRQRPSGKWAAEIKDTSRKIRLWLGTYQTAEEAARAYDEAACFLRGSNTRTNFSTHGIAANSPISLKLRKLLDRKAISNQIRNHNIMINPTFQVADSVAASPNGIMVMEDNNSACTSGENLSLFTVQNQVSDNPYGLDMNVINCSMSVAPNTSHFDCYWPLPQQRINELPIPKYDLDVERHLSTSVYGMNECYLEDAYESKYEYDVNYPLSSLLNFT* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0940 226 Pfam AP2 domain 8 55 IPR001471 GO:0003700|GO:0006355
Lja4g0940 226 CDD AP2 5 62 IPR001471 GO:0003700|GO:0006355
Lja4g0940 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11 3 211 - -
Lja4g0940 226 SUPERFAMILY DNA-binding domain 6 63 IPR016177 GO:0003677
Lja4g0940 226 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lja4g0940 226 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lja4g0940 226 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lja4g0940 226 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 211 - -
Lja4g0940 226 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Lja4g0940 226 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0940 Lja-Chr4 7995828 7996508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0940 4 81 AP2-EREBP Transcription Factor Family AT5G19790 74.359 4.11e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja4g0940 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0940 K09286 - gmx:100809046 287.73