Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0938 ATGAAAGCTGAATTTCATGTTAACAGGAACATGGCAACTTTAGTGGAGCCCCCAAACAGAATCAAGCCTAAAGGGAAGCACTATTACACAATATGGCAAACATTGTTTGAGATTGACATGAAGTATGTTCCGATCAAGCCTATTGGCCGAGGAGCGTACGGCGTGGTGTGCTCTTCCATCAATAAGGAGACCAATGAGAAGGTTGCAATTAAGAAGATTGGTAACATATTTGAGAATTGCATAGATGCTATGAGAACTTTAAGGGAGCTGAAGCTGCTTAGACACATTCAGCATGAGAATGTGATTGCTTTGAAAGATGTCATGATGCCAACCCAGAGAACAAGTTTCAAGGATGTCTACTTGGTCTATGAACTCATGGATACCGATCTTCATCATATTATAAAGTCCTCTCAGTCACTGTCAAATGATCATTGCAAATTTTTCTTGTTTCAGCTGCTTCGAGGTCTTAAATATCTTCATTCTGCAAACATTCTTCACCGGGACCTGAAGCCTGGGAATTTGCTTGTCAATGCCAATTGTGACTTGAAGATTTGTGACTTTGGGCTTGCGCGAACCAATGGAGTTGATGGCCAGTTTATGACTGAGTATGTTGTTACTCGATGGTATCGCGCTCCAGAGCTCCTTTTATGCTGTGACAATTATGGAACCTCTATTGATGTCTGGTCTGTAGGATGCATTTTTGCTGAGATTCTTGGTAGAAAGCCAATCTTCCCTGGAACTGAGTGCCTTAACCAGCTCAAACTAATCATAAGCGTTCTTGGAAGCCAGGATGATCCTGATCTTGAGTTTATCGATAATCCGAAAGCCAGGAGATTCATCAAAACACTTCCCTTTACACGGGGCAAACACTTCTCTCAGCTATACCCACAAGCAGATCCATTGGCCATAGATTTGCTGCAAAAAATGCTTGTATTTGATCCCACTAAAAGAATTACTGTCTTAGAAGCACTTCAACATCCATATATAGCTGACCTATATGATCCAAGGTGTAATCCTCCTGCTCAGGTTCCTATCAATCTTGACATGGATGAAAGTGAGAATGAAGAGATTATTAGGGAAATGATGTGGAATGAGATGCTTAATTATCACCCTGAAGCTGCATATGCTAATGCATAG 1137 0.4116 MKAEFHVNRNMATLVEPPNRIKPKGKHYYTIWQTLFEIDMKYVPIKPIGRGAYGVVCSSINKETNEKVAIKKIGNIFENCIDAMRTLRELKLLRHIQHENVIALKDVMMPTQRTSFKDVYLVYELMDTDLHHIIKSSQSLSNDHCKFFLFQLLRGLKYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTNGVDGQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRKPIFPGTECLNQLKLIISVLGSQDDPDLEFIDNPKARRFIKTLPFTRGKHFSQLYPQADPLAIDLLQKMLVFDPTKRITVLEALQHPYIADLYDPRCNPPAQVPINLDMDESENEEIIREMMWNEMLNYHPEAAYANA* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0938 378 CDD STKc_TEY_MAPK 36 371 - -
Lja4g0938 378 ProSitePatterns Protein kinases ATP-binding region signature. 48 72 IPR017441 GO:0005524
Lja4g0938 378 Pfam Protein kinase domain 43 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0938 378 SMART serkin_6 42 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0938 378 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 17 375 - -
Lja4g0938 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Lja4g0938 378 SUPERFAMILY Protein kinase-like (PK-like) 36 336 IPR011009 -
Lja4g0938 378 ProSiteProfiles Protein kinase domain profile. 42 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0938 378 ProSitePatterns MAP kinase signature. 77 180 IPR003527 GO:0004707|GO:0005524|GO:0006468
Lja4g0938 378 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 17 375 - -
Lja4g0938 378 Gene3D Phosphorylase Kinase; domain 1 29 364 - -
Lja4g0938 378 Gene3D Transferase(Phosphotransferase) domain 1 126 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0938 Lja-Chr4 7978860 7981746 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0938 11 378 MAP Kinase Gene Family AT2G18170 82.609 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Lja4g0938 Pkinase 4.2e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0938 K20537 - gmx:100783422 694.886