Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0922 ATGTCAGACAGGTATGAGATTCATGATGAAAACGAGAGGAGTGAGGACCAAGGTGATGACAATTCAATTGGATCTTCTCAGAAATTGTCATCTTTTGACTTGAATGAAGACGCATGTAGTGAAGATAACACTGATATTAATGATGATGAGGCCTGTGATGATGAGATCACAGGTGAGGAATATGAGAAAGGAAAGGATGAAGGCACTTCAACCAATAGAAGTAGCACATCAAGAGAAGGAAATGGAAGAAGAGGTGGTGTGAGACAATATGTTAGATCAAAGATGCCTCGCCTTCGATGGACTCCTGATCTTCATCTTTCCTTTGTGCATGCTGTTGAAAGGCTTGGTGGTCAAGAGAGAGCAACACCAAAGTTGGTGCTTCAGCTAATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGTAGCAAGAAACTTGATGAGGCTGGGCAAGTACTCAGTCAGCCATACAGATCAACCCAAGGATTTGGTCGTATTTCTCAAGCCCATCAACCCATGATTCCTCATCAACATTTCAAGATGGGAAACGGTGGAATCATTCTTGCAAGTAATTACAATGAGCATAGCTATTTCCAAGGCCTACGGCCGCAACCCTCCTCCTTATCACATTCAGATTCACATTCAAAGGCCATCGATTCAAGGCACCAACAATGGTACTCTAATCATCAACCTTTCAGAAGGCCTAGTTTTGAATTTGTCTCCTCAACCTCAACGGCCCTACAAACACAAGGACGATCAATAGCTTCAAACCAAATTCAACTAATGGATACTACAAGACTTGCTCCCATGAGACCAAGCCAATTTCTTGAAGAGAAAAAGTGGCCTCCATTAGAAACTATGAACAATCATCATCATTGGAAGAAAAACTATTCATCACAATCTGTTTTACATCAATTTGGCACCACTCCAGCAGCTCTAAAACCAGCTGAGTTGAGCATTGGAACCAACACAAGAATCAAGGAATTTCTATCAAACCCTGATGAGCACCACAACCCTTCCAACAGTTTAAAGCTAGAATTTAATCCCCCATTCCGGATTAAGTTGAATCAAGAAAAGTTACAGATAGACAAGCAATGTGTGCCTGATTTGCAACTGAGTTTAAGTCAGAAAAATAGCAACAACGATGGTGGCGAGACCGATCATTCCAGAGAAACGCAAGAAATCAACACAAAACTTTCACTTTCTTAG 1227 0.4148 MSDRYEIHDENERSEDQGDDNSIGSSQKLSSFDLNEDACSEDNTDINDDEACDDEITGEEYEKGKDEGTSTNRSSTSREGNGRRGGVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSQPYRSTQGFGRISQAHQPMIPHQHFKMGNGGIILASNYNEHSYFQGLRPQPSSLSHSDSHSKAIDSRHQQWYSNHQPFRRPSFEFVSSTSTALQTQGRSIASNQIQLMDTTRLAPMRPSQFLEEKKWPPLETMNNHHHWKKNYSSQSVLHQFGTTPAALKPAELSIGTNTRIKEFLSNPDEHHNPSNSLKLEFNPPFRIKLNQEKLQIDKQCVPDLQLSLSQKNSNNDGGETDHSRETQEINTKLSLS* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0922 408 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 96 151 IPR006447 GO:0003677
Lja4g0922 408 SUPERFAMILY Homeodomain-like 94 150 IPR009057 -
Lja4g0922 408 Gene3D - 95 152 - -
Lja4g0922 408 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 408 IPR044848 GO:0003700
Lja4g0922 408 MobiDBLite consensus disorder prediction 1 88 - -
Lja4g0922 408 MobiDBLite consensus disorder prediction 1 19 - -
Lja4g0922 408 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 152 IPR017930 -
Lja4g0922 408 MobiDBLite consensus disorder prediction 208 227 - -
Lja4g0922 408 MobiDBLite consensus disorder prediction 380 408 - -
Lja4g0922 408 MobiDBLite consensus disorder prediction 20 37 - -
Lja4g0922 408 Pfam Myb-like DNA-binding domain 98 148 IPR001005 -
Lja4g0922 408 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 408 - -
Lja4g0922 408 MobiDBLite consensus disorder prediction 38 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0922 Lja-Chr4 7793659 7797812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0922 87 186 G2-like Transcription Factor Family AT2G42660 61.000 1.16e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja4g0922 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0922 - - gmx:100808625 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0922 4 7793659 7797812 Lja4g0922 4 7793659 7797812 ECH