Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0920 ATGAAACCCTTTTGCATATTCTTGATTCTTCTAACACTGTTTTCTCTCACAGAATCATCTTGCAACAGTGCAGGAGACCAGGCCCTGGTGTCAAAGGCTTTCAAATCTGTCTCCGGCTTCAACATCTCCACCTTGTTCCAAACCAGAGCTTCAAACTGTTCACACTCTCACATCACCAAAATAGTACTTCCATCCAAGAATCTAACCGGAACAATCTCATGGAGCTATCTGAGAAACATGTCCAATTTGCAGGTCCTTGATCTCTCTGGAAATTCACTAGAAGGCCACATCCCAAGCTGGTTTTGGTCAACTTTATCCTTGTTCGAAGTAAACCTCTCAAGGAACAAGTTTGGAGGCAGCATCATCTCTAACCTGAAACCAAAATCTTCATCACAGGTTCAAATGCTCAACCTCTCACACAACAGATTCACCAACTGGGTTTTCCTCTCTGGCTTCACAAACGTCAAAACCCTCGACCTCTCTCACAACAACCTACGAACACTCCCCTACGGATTCCAAAACCTCACCAAGCTTCAACACCTTAACCTCTCAAGCTGCAATCTCCAAGACAACATCAAATCCATCTCTTCCCTGCATTCACTTCACTCCTTGGACTTATCAAACAACACCTTAACCGGTTCCTTCCCTTCTGATTTCCCTCCACTGAACACGCTCCAATTCCTCAACATCTCACTCAACAACTTCAACTCCTCTGTTCCCTTAAACAAGTTCAACAAATTCAGCAAGTCAGCTTTCATCCAAGCCGGTAACAACTTCACCTACGATGTAAACTCTCCAACCCCACCACAATTCCAAGCCATTCATTACAAAAAATCCAATCCAAAACGCAAGAGATTGATAATTACAGTGTGCTCTGTTTTATCAGCACTTGCTCTGTTTGCTCTGTTTATCTGGGTACTCTGCATTGTTAGAAAGAGGAGGAAACGTTGCATGAAGAACAAATGGGCAATCTCGTTACCGGTTCGACCGGCCATGACGAAGGTGGAGAAGAAATCAGGGCCATTCGCGTTTGAAACAGAGTCAGGGTCAACGTGGGTGGCTGAGATCAAAGAACCGTCGTCTGCACCGGTGGTGATGTTTGAGAAGCCGTTGATGAGTTTCACATTCAAGGACCTCATCGTTGCCACGTCACACTTCGGGAAGGAGTCGCAGCTGGCGGAGGGAAGGGGTGGCGGGCCGGTGTACAGGGCGGTGCTGCCCGGTGACCTCCACGTGGCGATCAAGGTGCTGGAACATGCTAGGGACGTTGATTGTGTTGATTCTGTGGCAATGTTCGTTGACCTTGCTCAGCTCAAGCACCCTAACTTGTTACCTCTCTCCGGTTACTGCATTGCAGGTAAGAAGAAGCTGGTGCTATACGAGTTCATGGCAAACGGCGATTTAGGGAGGTGGCTCCACGAGCTTCCAACAGGAGACACTAACGTGGAGGATTGGACTAGCGACACGTGGGAGATTCAAAATGGTGTTGTGGAAGAATCCCCAGAAAAGATGGGGTGGCTGACACGACACCGCATCTCGGTGGGGATAGCGCGTGGCCTCGCATACCTCCACCACGGGCGATCGAAGCCCGTGGTGCACGGCCACCTCGTCACCTCCAACATCTTGCTTGCCGACGACTTTGAGCCCCGAGTTGCAGATTTCGGGCTTCGGGATGACTCGAGCCCGAATGGAGGCACCGAGGCTGACGTATACTGCTTTGGTGCAGTGTTGATGGAGCTGCTGACAGGGAGAGTCAGCACGGCGGAGACGGTGGTTGCGGTCAAGAAAGCGGTGAGGGATGATGATGGTGTTAGAGTTCTAGATGAGAGGCTACAACTCGACGGCGATGACTCAATGTTGAGTCAAATGGTGGAGAGCCTTCGAGTCGCGCTCTTGTGTACGGCTGAGTCACCTTCTAAGAGACCCACCATGCAGCAGGTTTTGGGTTTGCTTAAAGACATTCATCCACCTCATCAATGA 1980 0.4944 MKPFCIFLILLTLFSLTESSCNSAGDQALVSKAFKSVSGFNISTLFQTRASNCSHSHITKIVLPSKNLTGTISWSYLRNMSNLQVLDLSGNSLEGHIPSWFWSTLSLFEVNLSRNKFGGSIISNLKPKSSSQVQMLNLSHNRFTNWVFLSGFTNVKTLDLSHNNLRTLPYGFQNLTKLQHLNLSSCNLQDNIKSISSLHSLHSLDLSNNTLTGSFPSDFPPLNTLQFLNISLNNFNSSVPLNKFNKFSKSAFIQAGNNFTYDVNSPTPPQFQAIHYKKSNPKRKRLIITVCSVLSALALFALFIWVLCIVRKRRKRCMKNKWAISLPVRPAMTKVEKKSGPFAFETESGSTWVAEIKEPSSAPVVMFEKPLMSFTFKDLIVATSHFGKESQLAEGRGGGPVYRAVLPGDLHVAIKVLEHARDVDCVDSVAMFVDLAQLKHPNLLPLSGYCIAGKKKLVLYEFMANGDLGRWLHELPTGDTNVEDWTSDTWEIQNGVVEESPEKMGWLTRHRISVGIARGLAYLHHGRSKPVVHGHLVTSNILLADDFEPRVADFGLRDDSSPNGGTEADVYCFGAVLMELLTGRVSTAETVVAVKKAVRDDDGVRVLDERLQLDGDDSMLSQMVESLRVALLCTAESPSKRPTMQQVLGLLKDIHPPHQ* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0920 659 Pfam Leucine rich repeat 132 188 IPR001611 GO:0005515
Lja4g0920 659 Pfam Leucine rich repeat 57 117 IPR001611 GO:0005515
Lja4g0920 659 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 658 - -
Lja4g0920 659 PRINTS Leucine-rich repeat signature 155 168 - -
Lja4g0920 659 PRINTS Leucine-rich repeat signature 198 211 - -
Lja4g0920 659 Gene3D Ribonuclease Inhibitor 129 246 IPR032675 -
Lja4g0920 659 PANTHER KINASE, PUTATIVE-RELATED 3 658 - -
Lja4g0920 659 ProSiteProfiles Leucine-rich repeat profile. 154 176 IPR001611 GO:0005515
Lja4g0920 659 SUPERFAMILY RNI-like 52 243 - -
Lja4g0920 659 Gene3D Transferase(Phosphotransferase) domain 1 463 563 - -
Lja4g0920 659 Gene3D Transferase(Phosphotransferase) domain 1 564 658 - -
Lja4g0920 659 Gene3D Ribonuclease Inhibitor 30 128 IPR032675 -
Lja4g0920 659 Gene3D Phosphorylase Kinase; domain 1 346 462 - -
Lja4g0920 659 SUPERFAMILY Protein kinase-like (PK-like) 363 652 IPR011009 -
Lja4g0920 659 SMART LRR_typ_2 198 221 IPR003591 -
Lja4g0920 659 SMART LRR_typ_2 80 103 IPR003591 -
Lja4g0920 659 SMART LRR_typ_2 152 174 IPR003591 -
Lja4g0920 659 Pfam Protein tyrosine and serine/threonine kinase 392 560 IPR001245 GO:0004672|GO:0006468
Lja4g0920 659 ProSiteProfiles Protein kinase domain profile. 386 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0920 Lja-Chr4 7783393 7786849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0920 58 654 Receptor kinase-like Gene Family AT5G07280 30.109 6.48e-69 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Lja4g0920 PK_Tyr_Ser-Thr 2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0920 - - lja:Lj0g3v0310539.1 993.416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0920 4 7783393 7786849 Lja4g0920 4 7783393 7786849 ECH
Lja4g0920 4 7783393 7786849 Lja6g2944 6 58424756 58428173 PCT