Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0918 ATGGATCAGGCAAGAAGTGGAGGAAGTGGTGAGATGTTGGACCATGTTGATGAAGGGGTGGGTGAGAATTTGAGCCATTTGGGTGAAGGAGTTGCAATTGATGTAGGAGCTGGTGGTAGCTTGGGTGACAGAGCTAGTGTAAGCGGCGAAGATGGGATTTCAGAAGAGATGTGCAGTGATGATCTCGGGTTGAATAACAAGGAGGTAGAGGAAGGGCCTCAAGAAGTTAAGGGTCAGGACATCGGGGAACCGCAGAAGATCGGTGATGAATTGCGCGAGGTTGATCAAGGAACTAGCTATAATTCGAGTGGTTTGGTTAATCCGGAAGTACCTGAGACTGAGACCTTTGTTGTATTAGATCTTTCTGCTCAGAGTGAGGGTGTAAATGGTGGTAATAGGAAATTGGAAGAAAAAGCGAATGAATCAGGGTTGCGTAAGTTATCCGTTAAGGCGCCAAAAGGGGTGTCTGTGGCAGATAAAAATTCATGTGTGATTGATATAAACTGTGGCAGCTGCAAAGAGTTTTGTGGGAATAAGGAAGGTGAAATGATTTGTAGGATTTGCCATTTGGCCTCTGAGCAACCATTAGAAGCAACAGCTGCTGGCGGCGCTCCGAATAGTGTTGGGAATGGTACTGGTTTGATTGTGCTTGGTTGTGCTTGTAAAGATGAGCTAGGCATTGCACACAGTCATTGCGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGGTATGTGAAATATGTGGTCAGACTGCAAAAAATGTTTCGGATATTACTGATAATAGATTTATGGAAGAGTGGAATGCAAGTAGATTCATCGACGGCGATGATACCTCGTCCCGCAGGTGCGGTGGGTGCTGGCGCGGACAGCCCTTCTGTAACTTCTTGATGGCGTGCCTGGTGATCGCCTTTGTTCTGCCATGGTTCTTTCGTGTAAATATGTTCTAG 948 0.462 MDQARSGGSGEMLDHVDEGVGENLSHLGEGVAIDVGAGGSLGDRASVSGEDGISEEMCSDDLGLNNKEVEEGPQEVKGQDIGEPQKIGDELREVDQGTSYNSSGLVNPEVPETETFVVLDLSAQSEGVNGGNRKLEEKANESGLRKLSVKAPKGVSVADKNSCVIDINCGSCKEFCGNKEGEMICRICHLASEQPLEATAAGGAPNSVGNGTGLIVLGCACKDELGIAHSHCAEAWFKIKGNRVCEICGQTAKNVSDITDNRFMEEWNASRFIDGDDTSSRRCGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0918 315 ProSiteProfiles Zinc finger RING-CH-type profile. 177 255 IPR011016 GO:0008270
Lja4g0918 315 PANTHER ZINC FINGER, RING-CH-TYPE 1 315 - -
Lja4g0918 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 253 IPR013083 -
Lja4g0918 315 SUPERFAMILY RING/U-box 180 252 - -
Lja4g0918 315 SMART ringv_2 184 249 IPR011016 GO:0008270
Lja4g0918 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 315 - -
Lja4g0918 315 Pfam RING-variant domain 185 248 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0918 Lja-Chr4 7722352 7725465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0918 111 314 C3H Transcription Factor Family AT5G05830 34.579 7.09e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0918 - - gmx:100791129 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0918 4 7722352 7725465 Lja4g0918 4 7722352 7725465 ECH