Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0900 ATGAAGTGGGGTGGAAGAAGAAAACCTTCTTCAGGTTCTTCTTCTTCTTCTTCTAAGCCTTCTTTCACCTCTCCTTTTTCTTGGCTCTCCAAGTTCAAGCAGATGAGAATCAACAACAACTCTGAGCCAAAACAAGAAAAACAACTGAAGCATCAGAATACAAAGCAGAATTCCCCATCTGATAATTCATCCCAATATCAATATGCTAGTGGGAGTGGAGCCAGGTTTTATGGAGAGGATGGTGATGATTTCTGGAGACTTTCATTCTATGTAGAGGGCAATAATGATCATAAGGAGAGTACTGAAGATGTTATCAAGCCAGAAAAGTACAATTTGGATGCTGAAAGACATGGAAGAAGAGAAGGGACAAGGCAGAAGAAGGAAATTGGGGTGAAAGAAGAAAGGGAATCACTAAATGAAGCAAAGTGTGCAAAGGAGCTTGAATGCTTGAGGAGGAGATATGAGAGGAAAGCACATAGAGTTTTGCAAGAGCATCTCTTGAAATCAGAAAGAGCAGAATTACAAGAAGTTGAATTTGCACCAAGAAGTAAGTACTTGGAAAAGGATGAGATTCAATTTGAATCACCAAAAACAATTAGGACACCAAGAATGCACATGCTTTTCTCTTCTAGTGCATCTAGCACCCAAAACTCTGAGAAGAAAATGAGCTCACAGAGGCAGAATTTGAAACAAGGTGAGGATGTCAAAGCAAAAGTCAGCAAACCAAGGAAATCAATTCATGTGAGCAGAGAAATCCAGGGGAGGAAACCAAAGCCCACTTCCTCCAAGGTGAGAGTGCATTCTCCAAGGATGAGTTCCAAGGTTGAAACATGCAAAATAAAGGCTTTGGAAGAAAAGAAAGCAAAGCTGAAGATGAAGAAAGAAGAGGAAATTGTGGAGGAAAAAGTAGAATTAGATAGCTTTGCTGTGGTGAAATCTTCCCTTGACCCACAACAAGATTTCATGGATTCAATGATTGAGATGATCACAGAGAAACAGATTAGCAAGCCAGAAGAAATGGAAGAGCTTCTAGCATGTTACCTGACTTTGAATTCTAATGAGTGGCATGATCTCATCATTGAAGCGTTCAGGCAGGTATGGTTATATCTGAGCCAAGCTGGTTTGAGTGTTAAATCAGACAAGCAATGTTGTTGTTGTCATGATTGA 1167 0.4002 MKWGGRRKPSSGSSSSSSKPSFTSPFSWLSKFKQMRINNNSEPKQEKQLKHQNTKQNSPSDNSSQYQYASGSGARFYGEDGDDFWRLSFYVEGNNDHKESTEDVIKPEKYNLDAERHGRREGTRQKKEIGVKEERESLNEAKCAKELECLRRRYERKAHRVLQEHLLKSERAELQEVEFAPRSKYLEKDEIQFESPKTIRTPRMHMLFSSSASSTQNSEKKMSSQRQNLKQGEDVKAKVSKPRKSIHVSREIQGRKPKPTSSKVRVHSPRMSSKVETCKIKALEEKKAKLKMKKEEEIVEEKVELDSFAVVKSSLDPQQDFMDSMIEMITEKQISKPEEMEELLACYLTLNSNEWHDLIIEAFRQVWLYLSQAGLSVKSDKQCCCCHD* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0900 388 ProSiteProfiles OVATE domain profile. 310 369 IPR006458 -
Lja4g0900 388 MobiDBLite consensus disorder prediction 210 271 - -
Lja4g0900 388 MobiDBLite consensus disorder prediction 231 258 - -
Lja4g0900 388 MobiDBLite consensus disorder prediction 1 74 - -
Lja4g0900 388 MobiDBLite consensus disorder prediction 8 42 - -
Lja4g0900 388 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 6 383 IPR038933 GO:0045892
Lja4g0900 388 MobiDBLite consensus disorder prediction 52 71 - -
Lja4g0900 388 PANTHER TRANSCRIPTION REPRESSOR OFP4 6 383 - -
Lja4g0900 388 Coils Coil 280 300 - -
Lja4g0900 388 Coils Coil 144 164 - -
Lja4g0900 388 MobiDBLite consensus disorder prediction 210 230 - -
Lja4g0900 388 Pfam Transcriptional repressor, ovate 314 370 IPR006458 -
Lja4g0900 388 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 308 371 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0900 Lja-Chr4 7534668 7535834 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lja4g0900 Ovate 3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0900 - - lja:Lj4g3v2618480.1 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0900 4 7534668 7535834 Lja4g0900 4 7534668 7535834 ECH
Lja4g0900 4 7534668 7535834 Lja6g2917 6 58233727 58234968 PCT