Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0899 ATGGATGAAGCACAGAACAGTTCAAGTTCCCTGCCTCCTTTCCTGGCAAAGACATATGAGATGGTGGATGATCCTTCTTCGGATCGGATTGTTTCCTGGAGTGCGACTAATAGAAGTTTCGTTGTATGGAATCCCCCAGATTTTGCAAGGGAATTGCTCCCTAGATTCTTCAAGCACAATAACTTCTCAAGTTTTATCCGGCAGCTGAACACATATGGATTTCGGAAAGTTGACCCTGAACAATGGGAATTTGCCAATGATGGTTTTGTGCGAGGGGAACCACATCTTATGAAGAATATTCACAGACGGAAGCCGGTTCACAGCCATTCTATGCAGAATCTCCAAGCACATGCACCACTAGGGGAGTCAGAAAGGAAGAGTTTAAATGATGAAATAGAGAAGCTTAAACACAATAAAGAACGACTCCTTATGGAGTTACAAAGACATCAGCACGAGTGGCAACCGTATGAGATACAACTAAATTGCTTAAAAGAACAGTTGGAGAAGTTGGAACAGAAGCAACAAAAGATGGTCTCTTCTGTTTCTCAAGTGTTGCACAAGCCTGTGATTGCTCTAAATCTATTGCCACCGACAGAAACCATGGATAGAAAGCGGAGGTTACCAGGAGGTGGCTACTTTAATGATGAAGCTAGCATTGAAGATGCTGTTGATACTTCCCAAATGTTACCCAGAGAAAATGCAGAGGGGGCCTCTGTTTTGACATTAAACATGGAGCGATTGGATCAGCTTGAGTCATCCATGTTATTTTGGGAAACTATTGCACATGAATCTGGTGAAACCTTCATTCACATTCATACAAACATGGATGTTGATGAATCTACAAGTTGTGCTGATAGTCTGTCTATATCTTGTCCGCAACTAGAAGTTGAAGTTCGGTCTAAGTCATCTGGAATTGACATGAACTCTGAGCCAACTGCAGCTGCTGTTCTTGAGCCCGTTGCATCGAAAGAACAACCTGCAGGAAAAGCTGCAGCAACTGGTGTTAATGATGTGTTCTGGGAACAATTCTTGACAGAGGATCCCGGTGCATCAGAAGCACAGGAAGTGCAGTCAGAAAGAAAGGAATATAATGGCAGGAAAAGTGAAGGAAAACCTACTGACCACGGAAGATTTTGGTGGAATGCGCGAAATGCAAATAATCTTCCAGAACAGGTGGGGCATGTTAGTCAAGCAGAGAAAACTTAA 1206 0.4295 MDEAQNSSSSLPPFLAKTYEMVDDPSSDRIVSWSATNRSFVVWNPPDFARELLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDGFVRGEPHLMKNIHRRKPVHSHSMQNLQAHAPLGESERKSLNDEIEKLKHNKERLLMELQRHQHEWQPYEIQLNCLKEQLEKLEQKQQKMVSSVSQVLHKPVIALNLLPPTETMDRKRRLPGGGYFNDEASIEDAVDTSQMLPRENAEGASVLTLNMERLDQLESSMLFWETIAHESGETFIHIHTNMDVDESTSCADSLSISCPQLEVEVRSKSSGIDMNSEPTAAAVLEPVASKEQPAGKAAATGVNDVFWEQFLTEDPGASEAQEVQSERKEYNGRKSEGKPTDHGRFWWNARNANNLPEQVGHVSQAEKT* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0899 401 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 382 - -
Lja4g0899 401 Gene3D - 6 104 IPR036388 -
Lja4g0899 401 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0899 401 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Lja4g0899 401 Coils Coil 125 180 - -
Lja4g0899 401 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0899 401 MobiDBLite consensus disorder prediction 346 379 - -
Lja4g0899 401 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0899 401 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0899 401 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0899 401 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0899 401 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 382 IPR027725 -
Lja4g0899 401 MobiDBLite consensus disorder prediction 353 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0899 Lja-Chr4 7523190 7525634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0899 1 401 HSF AT4G18880 51.566 7.79e-123 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja4g0899 HSF_DNA-bind 2.8e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0899 K09419 - gmx:100798004 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0899 4 7523190 7525634 Lja4g0899 4 7523190 7525634 ECH
Lja6g2916 6 58229330 58231488 Lja4g0899 4 7523190 7525634 ECH
Lja4g0899 4 7523190 7525634 Lja6g2916 6 58229330 58231488 PCT