Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0898 ATGGCTAACAATTCAGCTTCATTTGAAACCCATGATGTAGTTTTAAGTGTCAACAAGGATGCCTCAAAAACAATTGAAAGCTCAGACACATACACCTCTGTCTTTTTCGTACAAAAGTTGGTAGCTGAATTTGTGGGCACATTTTTCTTGATATTTACTGGTTGTGCTTCGATTGTGGTGAACAAGAACAATGACAATGTGGTGACACTTCCTGGGATTGCACTTGTTTGGGGTCTGGTTTTGATGGTGCTGATTTACTCTGTTGGTCACATCTCTGGTGCTCATTTTAATCCTGCTGTTACCTTTGCTTTTGCCACCACCAAAAGGTTTCCATGGATACAGGTAGCACCTTACATAGCATCTCAGCTCCTTGGAGCCGTACTTGCTAGTGGAATTCTGAAAATGTTATTTAGTGGCACGCATGACCAGTTTTCAGGAACAATCCCATCTGGGACTAACCTGCAAGCTTTTGTGATTGAATTCATAACCACTTTTCTCCTAATGTTTGTCATATCAGCAGTTGCCACTGATAACAGAGCGATTGGTGAGATGGCTGGGATTGCAATTGGGTCTACATTACTGCTAAATATATTGATTTCAGGGCCGATCACAGGAGCCTCAATGAACCCAGCAAGAACCCTAGGACCTGCTATTTTTCACAGTAAATACAGAGCAATAGTGGTATACTTTGTGTCAACTATTTTTGGGGCTGTGGCTGGAGCATGGGTCTTCAACATCCTCAGATACACAGACAAGCCATTACATGAGATAACCAAGGGTTCCTCTATCCTCAAATGA 798 0.4211 MANNSASFETHDVVLSVNKDASKTIESSDTYTSVFFVQKLVAEFVGTFFLIFTGCASIVVNKNNDNVVTLPGIALVWGLVLMVLIYSVGHISGAHFNPAVTFAFATTKRFPWIQVAPYIASQLLGAVLASGILKMLFSGTHDQFSGTIPSGTNLQAFVIEFITTFLLMFVISAVATDNRAIGEMAGIAIGSTLLLNILISGPITGASMNPARTLGPAIFHSKYRAIVVYFVSTIFGAVAGAWVFNILRYTDKPLHEITKGSSILK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0898 265 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0898 265 Pfam Major intrinsic protein 32 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0898 265 Gene3D Glycerol uptake facilitator protein. 2 258 IPR023271 -
Lja4g0898 265 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0898 265 PANTHER AQUAPORIN NIP2-1 1 265 IPR034294 -
Lja4g0898 265 SUPERFAMILY Aquaporin-like 32 258 IPR023271 -
Lja4g0898 265 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Lja4g0898 265 PANTHER NODULIN-26 1 265 - -
Lja4g0898 265 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0898 265 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0898 265 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0898 265 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0898 265 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0898 265 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0898 Lja-Chr4 7512342 7516128 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0898 1 265 Major Intrinsic Protein MIP AT5G37810 48.889 2.26e-93 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0898 K09874 - gmx:100813448 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0898 4 7512342 7516128 Lja6g2902 6 58127643 58131445 PCT