Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0897 ATGGGTGAGAGTTCCGCACCCAATGGACTGAATGGAGCTCATGAGGTAGTTGTAAATGTAAACAAGGATGCCTCTAAGACAATTGAAGTCTCAGACACCAACTTCACTGTTTCTTTCTTGCAGAAGGTAATAGCTGAGTTGGTGGGTACTTATTTTTTTATATTTGCTGGTTGTGCTTCCATTGTGGTGAACAAGAACAATGACAATGTGGTCACACTTCCTGGTATTGCACTTGTCTGGGGACTGGCTGTGATGGTGCTGGTTTACTCTCTTGGTCACATTTCTGGTGCCCATTTCAATCCTGCTGCCACCATTGCATTTGCCTCCACCAAAAGGTTTCCCTGGAAGCAGGTACCAGCTTATGTATCAGCCCAGGTCCTTGGATCCACACTTGCAAGTGGAACTCTTAGACTAATATTCAGTGGCAAGCATAACCAATTTGCAGGAGCACTCCCAACTGGGTCTAATCTGCAAGCTTTTGTGATTGAATTCATAATCACTTTTTTCCTTATCTTTATCTTATTTGGGGTTGCCACTGATGATCGAGCGATTGGTGAGGTTGCTGGGATTGTGGTGGGATCTACAGTGCTTTTGAATGTGTTGTTTGCAGGGCCAATAACTGGAGCATCAATGAACCCAGCAAGAAGCATAGGGTCTGCTTTTGTACACAATGAGTACAGAGGAATATGGATATACTTGCTATCTCCAACTCTGGGGGCAGTGGCTGGTGCATGGGTCTATAACATCGTTCGCTACACAGACAAGCCATTGCGTGAGATCACTAAAAATGTCTCTTTTCTCAAAGGAATATGA 813 0.4428 MGESSAPNGLNGAHEVVVNVNKDASKTIEVSDTNFTVSFLQKVIAELVGTYFFIFAGCASIVVNKNNDNVVTLPGIALVWGLAVMVLVYSLGHISGAHFNPAATIAFASTKRFPWKQVPAYVSAQVLGSTLASGTLRLIFSGKHNQFAGALPTGSNLQAFVIEFIITFFLIFILFGVATDDRAIGEVAGIVVGSTVLLNVLFAGPITGASMNPARSIGSAFVHNEYRGIWIYLLSPTLGAVAGAWVYNIVRYTDKPLREITKNVSFLKGI* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0897 270 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 270 - -
Lja4g0897 270 Gene3D Glycerol uptake facilitator protein. 7 262 IPR023271 -
Lja4g0897 270 CDD MIP 41 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0897 270 Pfam Major intrinsic protein 36 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0897 270 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0897 270 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0897 270 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0897 270 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0897 270 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0897 270 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lja4g0897 270 PANTHER AQUAPORIN NIP2-1 1 270 IPR034294 -
Lja4g0897 270 SUPERFAMILY Aquaporin-like 36 261 IPR023271 -
Lja4g0897 270 TIGRFAM MIP: MIP family channel proteins 45 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0897 Lja-Chr4 7507880 7511763 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0897 22 270 Major Intrinsic Protein MIP AT5G37820 55.378 6.25e-98 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g0897 K09874 - gmx:100798526 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0897 4 7507880 7511763 Lja4g0897 4 7507880 7511763 ECH
Lja4g0897 4 7507880 7511763 Lja6g2901 6 58117647 58121680 PCT